View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_6 (Length: 380)
Name: NF11448_low_6
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 14121047 - 14121415
Alignment:
| Q |
12 |
agaagcccaacgtcttgtgaacactcttgagcgcgttaacagaccgatcttgggggatgagcttgtgtacagagttgacgactttgagtttgatatccgc |
111 |
Q |
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| T |
14121047 |
agaagcccaacgtctggcgagcaatcttgaccgcgttaaccgaccgatcttggggcatgaggttgcgggcagagtggacgactttgaatttgatatccgg |
14121146 |
T |
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| Q |
112 |
cgtccagtgtatcgatggaccacgaggccttaccaggagatcttagcaaacgggtttcaagcaccagctcaaggaaacactcccaacaacacttactatg |
211 |
Q |
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| T |
14121147 |
cgtccagtgtatcgatggaccacgaggccttaccaggagatcttagcaaacgggttccaagcaccagctcaaggaaacactcccaacaacacttactata |
14121246 |
T |
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| Q |
212 |
atctttacgactttgtccataatgctggggcgcctcttgacccaaacaggcctgtatctcgtgtctttattagcaccactgttaataatgcatggcgccc |
311 |
Q |
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| T |
14121247 |
atcttgacgactttgtccataatgctggggcgcctcttgaccccaacaggcctgtagctcatgtctttattagcaccactgttaataatgcatggcgccc |
14121346 |
T |
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| Q |
312 |
aaatccttcaactgatgtcctcccgataggaaggcagattcaattatatcgttatgagatctttgctcc |
380 |
Q |
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| T |
14121347 |
aaatccttcaactgatgtcctcccgataggaagtcagattcaattgtatcgttatgagatctttgctcc |
14121415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 14113651 - 14113988
Alignment:
| Q |
43 |
cgcgttaacagaccgatcttgggggatgagcttgtgtacagagttgacgactttgagtttgatatccgccgtccagtgtatcgatggaccacgaggcctt |
142 |
Q |
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| T |
14113651 |
cgcgttaacagacagatcttagggcatgaggttgtggacagagtggacgactttgagtttgatatccgccgtccaatgtatcgatggagcaggaagcctt |
14113750 |
T |
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| Q |
143 |
accaggagatcttagcaaacgggtttcaagcaccagctcaaggaaacactcccaacaacacttactatgatctttacgactttgtccataatgctggggc |
242 |
Q |
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| T |
14113751 |
accaggagatcttcacaaacgggttccaagcaccagatcaaggaaacgctgacaacaacatttaccatgatcttgacggctttgtccatagtgttggggt |
14113850 |
T |
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| Q |
243 |
gcctcttgacccaaacaggcctgtatctcgtgtctttattagcaccactgttaataatgcatggcgcccaaatccttcaactgatgtcctcccgatagga |
342 |
Q |
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| T |
14113851 |
gcctgttgaccccaacagagctgtacctcgtgcctttattagcaccactattaataatgcatggcgtccaaatccttcaactgatgtcctcccgatagga |
14113950 |
T |
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| Q |
343 |
aggcagattcaattatatcgttatgagatctttgctcc |
380 |
Q |
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| T |
14113951 |
agtcagattcaattgtatcgttatgagatctttgctcc |
14113988 |
T |
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