View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_7 (Length: 378)
Name: NF11448_low_7
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 46266789 - 46266945
Alignment:
| Q |
1 |
cggagcggaaatcaaaacggcaatcaatacctgcatcaacgtgttcatcaaaacgacaatgcagttcaatgcatgattgacatcaataaaaacatatacg |
100 |
Q |
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| T |
46266789 |
cggagcggaaatcaaaaccgcaatcaatacctgcatcaacatgttcatcaaaacgacaatgcagttcaatgcatgattgacatcaataaaaacatatacg |
46266888 |
T |
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| Q |
101 |
taaatgggaaaaacataatcattcttatatgaatatgaatagtggtatatacctggt |
157 |
Q |
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| T |
46266889 |
taaatgggaaaaacataatcattcttatatgaatatgaatagtggtatatacctggt |
46266945 |
T |
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Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 46267052 - 46267145
Alignment:
| Q |
264 |
tgtgttggataatgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggt |
357 |
Q |
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| T |
46267052 |
tgtgttggataatgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggt |
46267145 |
T |
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