View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_9 (Length: 359)
Name: NF11448_low_9
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 2081516 - 2081193
Alignment:
| Q |
16 |
aattattgttccatttcgtggtagatattgacacaaacttgaagaattttcagtttacaattgtgacatctaaaaaacgggtatacacaaacacaacata |
115 |
Q |
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| T |
2081516 |
aattattgttccatttcgtggtagatattgacacaaacttgaagaattttcagtttacaattgtgacatcttaaaaacgggtatacacaaacacaacata |
2081417 |
T |
|
| Q |
116 |
acattcataaaaacaagcaaggacaacccttgaatctataagaatgattttacaagacaatatgtgctccaccaatactggagaaacaacagttgtttct |
215 |
Q |
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| T |
2081416 |
acattcataaaaacaagcaaggacaacccttgaatctataagaatgattttacaagacaatatgtgctccaccaatactggagaaacaacagttgtttct |
2081317 |
T |
|
| Q |
216 |
ttaggtctcaaatatcccaaacactaaatgtcaaatccatatagtccccaaggagagaaacactaaaaaagatgttaccgattacctaacatgacaacca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2081316 |
ttaggtctcaaatatcccaaacactaaatgtcaaatccatatagtccccaaggagagaaacactaaaaaagatgttaccgattacctaacatgacaacca |
2081217 |
T |
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| Q |
316 |
caactcataaccacctacactctt |
339 |
Q |
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||||||||||||||| |||||||| |
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| T |
2081216 |
caactcataaccacccacactctt |
2081193 |
T |
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