View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1144_high_1 (Length: 742)
Name: NF1144_high_1
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 97 - 733
Target Start/End: Original strand, 8418202 - 8418855
Alignment:
| Q |
97 |
agacttggcctcataattgacttcctcaacaagcttggttgcattg---------aaca------acagaggccaggaagtagtaacgccaaccaactgc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||| |||||| |
|
|
| T |
8418202 |
agacttggcctcataattgacttcctcaacaagcttggttgcattggtttgtttcaacattgaacagagaggccacgaagtagtaacgccaacaaactgc |
8418301 |
T |
|
| Q |
182 |
tccttcccacttggatttcttttatgcatcatacttgaattttatttaaatcacctatatttgtacaccctcaacaaaaattacatctattcaaaatctc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8418302 |
tccttcccacttggatttcttttatgcatcatacttgaattttatttacatcacttatatttgtacaccctcaacaaaaattacatctgttcaaaatctc |
8418401 |
T |
|
| Q |
282 |
gttactcatatcacatcacaaacttatcaaaagaggattgctatacatagcgataaaatcatcaaaaagagatcacgaacaatttgcaaccgttagatca |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8418402 |
gttactcatatcacatcacaaacttatcaaaagaggattgctatacatagcgataaaatcatcaagaagagatcacgaacaatttgcaaccgttagatca |
8418501 |
T |
|
| Q |
382 |
ggcaatttctaggaaaacatgggcgggaaaaactaaaaggggttattgcagcaattactttctcacatcgtgatgctatcttgaccaaataattcgggag |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||| |
|
|
| T |
8418502 |
ggcaatttctaggaaaacatgggcgggaaaaactaaaaggggttattgcagcaattactttctcacatagtgattttatcgtgaccaaacaattcgggag |
8418601 |
T |
|
| Q |
482 |
aactagcatttctccttatcaaaattatcacattagtctcttcacttctttctcttatagattggagttcggatgtctaagaatcattttccttttattt |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8418602 |
aactagcatttctccttatcaaaattatcacattagtctctttacttctttctcttatagattgaagttcggatgtctaagaatcattttccttttattt |
8418701 |
T |
|
| Q |
582 |
attaaacaatagaggagtcaatttttcttttattataaaagtaatgttattcattcaaattgaaatagtatatcagaaataaacatggatgtaacatcgc |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
8418702 |
attaaacaatagaggagtcaatttttcttttattataaaagtaatgttattcattcaaattgaaatagtatatcataaataaacatggatgtaacatccc |
8418801 |
T |
|
| Q |
682 |
t--nnnnnnnnntctgcgaacaaatcaaagtaatagaaatattcatgcctatga |
733 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8418802 |
taaaaaaaaaaatctgcgaacaaatcaaagtaatagaaatattcatgcctatga |
8418855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 8374782 - 8374726
Alignment:
| Q |
158 |
gaagtagtaacgccaaccaactgctccttcccacttggatttcttttatgcatcata |
214 |
Q |
| |
|
|||||||||| ||||||||||| || || |||||||||||||||| ||||||||||| |
|
|
| T |
8374782 |
gaagtagtaaagccaaccaactactactgcccacttggatttcttctatgcatcata |
8374726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 8440275 - 8440323
Alignment:
| Q |
158 |
gaagtagtaacgccaaccaactgctccttcccacttggatttcttttat |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
8440275 |
gaagtagtaaagccaaccaactactcctacccacatggatttcttttat |
8440323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 311 - 495
Target Start/End: Original strand, 38291020 - 38291210
Alignment:
| Q |
311 |
aaagaggattgctatacatagcg-ataaaatcatcaaaaagagatcacgaacaatttgcaaccgttagatcaggcaatttctaggaaaacatgggcgg-g |
408 |
Q |
| |
|
|||||| |||||||||||||||| | |||||| |||| |||||||||| ||||||| |||||||||||||| |||| |||||||||||||||| || |
|
|
| T |
38291020 |
aaagagaattgctatacatagcgtacaaaatcctcaataagagatcacaaacaattagcaaccgttagatctaacaatctctaggaaaacatgggtggaa |
38291119 |
T |
|
| Q |
409 |
aaaaactaaaaggggttattgcagcaattactttctcacatcgtgatgctatc----ttgaccaaataattcgggagaactagcatttctc |
495 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||||||| |
|
|
| T |
38291120 |
aaaaaataaaaggggttattatttcagttactttctcacatcgtgatgctatcctaattaagcaaacaattagggaggactagcatttctc |
38291210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University