View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_14 (Length: 447)
Name: NF1144_high_14
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 430
Target Start/End: Complemental strand, 25731825 - 25731424
Alignment:
| Q |
30 |
gatacagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25731825 |
gatacagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgc |
25731726 |
T |
|
| Q |
130 |
tccaaattagagggaaattgtcgaacatccatggtccttgttgaacattttgttccatttccgtataactgaagaattggaacatgaagcgattatggtc |
229 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25731725 |
tccaaattagagggaaattgtcaaacatccatggtccttgttgaacattttgttccctttccgtataactgaagaattggaacatgaagcgattatggtc |
25731626 |
T |
|
| Q |
230 |
catcaaggagatgtccactttattttttggtttccataaggatgccatctgggttttgttggatggattgaaaggtgttcactgggcattagtaccaggg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25731625 |
catcaaggagatgtccactttattttttggtttccataaggatgccatctgggttttgttggatggattgaaaggtgttcactgggcattagtaccaggg |
25731526 |
T |
|
| Q |
330 |
gcagtgttttgggtagaagtagacatgatgagaaaaagagtaaggaaattgtagtacttttgtgatgcaa-gctatacaggttgtatcgcatttggtgat |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
25731525 |
gcagtgttttgggtagaagtagacatgatgagaaaaagagtaaggaaattgtagtacttttgtaatgcaatgctatacaggttgtatcgcatttggtgat |
25731426 |
T |
|
| Q |
429 |
ga |
430 |
Q |
| |
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|| |
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| T |
25731425 |
ga |
25731424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 16940992 - 16941174
Alignment:
| Q |
34 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
133 |
Q |
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||||||||||||| || || ||||| || ||||||||| | |||| || ||||| || |||| ||||| ||||| |||||||||| || ||| ||||| |
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| T |
16940992 |
cagtcataaatccaaatggcagattgtgcacttgcacc-agcattcgatggtatccaacagcatggtatagggatcattccccaccgagatcttactcca |
16941090 |
T |
|
| Q |
134 |
aattagagggaaattgtcgaacatccatggtccttgttgaacattttgttccatttccgtataactgaagaattggaacatgaa |
217 |
Q |
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|| || |||||||||| |||| ||| || ||||| |||||| || ||||||| |||| ||| |||||||||||||||||||| |
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| T |
16941091 |
aacaagtaggaaattgtcaaacagccacggaccttgctgaacaattcgttccatgtccgcatagctgaagaattggaacatgaa |
16941174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 33310074 - 33310212
Alignment:
| Q |
34 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
133 |
Q |
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||||||| || ||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||| | |||||||| || | | ||||||||||| |
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| T |
33310074 |
cagtcatgaaaccgaaggggagattatggacttgcatccataattcaattgagtctatgggcatagtgaacggatcttttccatcagaaaccttgctcca |
33310173 |
T |
|
| Q |
134 |
aattagagggaaattgtcgaacatccatggtccttgttg |
172 |
Q |
| |
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|||||| ||| | | || |||| ||| ||||||||||| |
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| T |
33310174 |
aattagcgggtagctatcaaacaaccaaggtccttgttg |
33310212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 35317357 - 35317219
Alignment:
| Q |
34 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
133 |
Q |
| |
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||||||| || ||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||| | |||||||| || | | ||||||||||| |
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| T |
35317357 |
cagtcatgaaaccgaaggggagattatggacttgcatccataattcaattgagtctatgggcatagtgaacggatcttttccatcagaaaccttgctcca |
35317258 |
T |
|
| Q |
134 |
aattagagggaaattgtcgaacatccatggtccttgttg |
172 |
Q |
| |
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|||||| ||| | | || |||| ||| ||||||||||| |
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| T |
35317257 |
aattagcgggtagctatcaaacaaccaaggtccttgttg |
35317219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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