View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1144_high_19 (Length: 338)

Name: NF1144_high_19
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1144_high_19
NF1144_high_19
[»] chr1 (6 HSPs)
chr1 (22-286)||(10549483-10549745)
chr1 (74-272)||(5960171-5960372)
chr1 (22-211)||(16765950-16766132)
chr1 (81-242)||(45909068-45909231)
chr1 (88-242)||(44711317-44711473)
chr1 (81-212)||(33803612-33803743)
[»] chr2 (5 HSPs)
chr2 (76-185)||(10925990-10926099)
chr2 (86-242)||(30213737-30213895)
chr2 (81-242)||(29810165-29810328)
chr2 (76-167)||(26264667-26264758)
chr2 (81-242)||(17310717-17310880)
[»] chr5 (7 HSPs)
chr5 (67-228)||(31043977-31044140)
chr5 (86-212)||(25762016-25762142)
chr5 (81-242)||(20234852-20235015)
chr5 (76-212)||(31059330-31059466)
chr5 (81-242)||(34832140-34832303)
chr5 (76-228)||(31048642-31048795)
chr5 (78-272)||(11633263-11633456)
[»] chr8 (2 HSPs)
chr8 (81-212)||(23255032-23255163)
chr8 (86-242)||(756180-756338)
[»] chr7 (4 HSPs)
chr7 (81-242)||(19217388-19217551)
chr7 (91-242)||(41255691-41255844)
chr7 (86-212)||(15892266-15892392)
chr7 (76-131)||(25010687-25010742)
[»] chr3 (4 HSPs)
chr3 (22-137)||(25478838-25478947)
chr3 (88-242)||(48094950-48095106)
chr3 (76-192)||(5158465-5158581)
chr3 (81-242)||(52970661-52970823)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 10549745 - 10549483
Alignment:
Q  22 caaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatt 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||    
T  10549745 caaatctcattctggtaacagagagatgtcttccttcctatccttcatatatat--caccctcatactcgaacctcaacatcttccagtgagtgtggatt 10549648  T
Q  122 tcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaagtgatcgaactcaaacaaccacctggattta 221  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549647 tcatccaaacggatggggattttgttcttgatcttcaatgcaatcgcacacacacatggcaatccgtaagtgatcgaactcaaacaaccacctggattta 10549548  T
Q  222 tccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatatttccttaatat 286  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  10549547 tccgtaccaagtccaactgctcaatcagcatcgtctacgagataatgcaaatctttccttaatat 10549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 74 - 272
Target Start/End: Complemental strand, 5960372 - 5960171
Alignment:
Q  74 atatcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggtttt-gttcttgatcttcaatgcaatcgcaccc 172  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||| |||||||||||||||| |||| | |||||||||||||||||||||||| |    
T  5960372 atatcaccctcatattcgaacctcaacctcttttagtgagtgtggattttatccaaacggatggggttttttgctcttgatcttcaatgcaatcgcacac 5960273  T
Q  173 gcacatggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgca 270  Q
    ||||||||||||| | |||||||| || |||||||||  ||||| ||||||||| |||| |   ||||||||| |||| | || ||| ||||||||||||    
T  5960272 gcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcgatcagcctcatctgcgagataatgca 5960173  T
Q  271 aa 272  Q
    ||    
T  5960172 aa 5960171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 16765950 - 16766132
Alignment:
Q  22 caaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatt 121  Q
    ||||||| |||| | || |||||||||||||||||||||||||||||| |      || |||||||||  ||||||||||||||  ||| ||| || |||    
T  16765950 caaatcttattccggtagcagagagatgtcttccttcctatccttcatgt------caacctcatacttaaacctcaacctcttttagtaagtgtgaatt 16766043  T
Q  122 tcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaagtgatcgaactcaaacaacca 211  Q
    ||||||||||| |||| | | |||||||||||||||||||||||| | | |||||| | ||||||| ||||||||  |||||||||||||    
T  16766044 tcatccaaacgaatggtgatgttgttcttgatcttcaatgcaatcac-cacgcacacgacaatccgaaagtgatctgactcaaacaacca 16766132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 45909068 - 45909231
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| |||||||||||||||||||||||||| || || ||||||||||||| || || ||||  ||| || ||||||||  |||||  || |||||| ||    
T  45909068 cctcgtactcgaacctcaacctcttccagtgggtgtgaatttcatccaaactgagggcggttccgttttttatcttcaaatcaatcatacacgcacacgg 45909167  T
Q  181 caatccgtaagtgatcgaactcaaacaacc--acctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||||||||| |||||||||||||  |  | |||||||||||||||| ||||| ||||    
T  45909168 taatccgtaagtgatcaaactcaaacaaccatattttgatttatccgtaccaatttcaagtgct 45909231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 44711317 - 44711473
Alignment:
Q  88 ctcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccg 187  Q
    ||||||||||||||||||| |||| || || |||||||||||||||| || ||||  ||| || ||||||||  |||||  ||  |||||  | ||||||    
T  44711317 ctcgaacctcaacctcttctagtgggtgtgaatttcatccaaacggagggcggttccgttttttatcttcaaaccaatcatacatgcacacagtaatccg 44711416  T
Q  188 taagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
    ||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  44711417 taagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 44711473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 33803743 - 33803612
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||||||| |||||||||||  ||| || || ||||| |||||||||| |  ||||  |||||||||||||||  |||||  ||  ||||| ||    
T  33803743 cctcgtactcgaacttcaacctcttctggtgggtgtgaatttcttccaaacggaagttggttccgttcttgatcttcaaaccaatcatacatgcacacgg 33803644  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac 212  Q
     ||| ||||||||||| |||||||||||||||    
T  33803643 taattcgtaagtgatcaaactcaaacaaccac 33803612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 10926099 - 10925990
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 175  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| |||| |||||||||||||| |||||||||| || | ||    
T  10926099 atcaccctcatactcgaacctcaacctcttccaataagtgtggatttcatccaaacgaatgagggtgttgttcttgatctttaatgcaatcgtacacaca 10926000  T
Q  176 catggcaatc 185  Q
    ||||||||||    
T  10925999 catggcaatc 10925990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 30213895 - 30213737
Alignment:
Q  86 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 185  Q
    |||||||||||||||||||||||||| || || |||||||||||| ||| || ||||  ||| |||||||||||  |||||  || |||||| || ||||    
T  30213895 tactcgaacctcaacctcttccagtgggtgtgaatttcatccaaatggagggcggttccgtttttgatcttcaaaccaatcatacacgcacacggtaatc 30213796  T
Q  186 cgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
    ||||||||||| |||| ||||||||||   | |||||||||||||||| ||||| ||||    
T  30213795 cgtaagtgatcaaacttaaacaaccacattttgatttatccgtaccaaattcaagtgct 30213737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 29810328 - 29810165
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||| ||||||||| |||||||||| || || ||||| |||||||||| || ||||  |||||||||||||||  |||||  || |||||| ||    
T  29810328 cctcgtactcaaacctcaacatcttccagtgggtgtgaatttcttccaaacggagggaggttgcgttcttgatcttcaaatcaatcatacacgcacacgg 29810229  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||| ||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  29810228 taatccgtaaatgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 29810165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 26264758 - 26264667
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcg 167  Q
    ||||||||||||||  |||| |||| ||||||||||||| |||||||||||||  | ||||||||| |||||||||||||||||||||||||    
T  26264758 atcaccctcatactataaccgcaacttcttccagtgagtgtggatttcatccacccagatgggggtgttgttcttgatcttcaatgcaatcg 26264667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 17310717 - 17310880
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||||||||||||||| |||||||| || || ||||| |||||||  | || |||   |||||||||||||||  || ||  || |||||| ||    
T  17310717 cctcgtactcgaacctcaacctattccagtgggtgtgaatttcttccaaacatagggtggtaccgttcttgatcttcaaatcattcatacacgcacacgg 17310816  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  17310817 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 17310880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 31043977 - 31044140
Alignment:
Q  67 catatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatc 166  Q
    |||| ||| ||||||||| ||||||||| |||||||| || ||||||| ||||| ||||||||||  |||||||| |||||||||||||||| |||||||    
T  31043977 cataaatagatcaccctcttactcgaacttcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgttgttcttgatcttcattgcaatc 31044076  T
Q  167 gcacccgcacatggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtac 228  Q
    | || ||||||||| |||| ||||| |||  || | |||||||  ||| |||||||||||||||    
T  31044077 gtacacgcacatggaaatctgtaagcgatgaaaattaaacaaccacacttggatttatccgtac 31044140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 25762142 - 25762016
Alignment:
Q  86 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 185  Q
    |||||||||||||||||||||||||| || || |||||||||||||||| || ||||  ||| |||||||||||  |||||  || |||||| || ||||    
T  25762142 tactcgaacctcaacctcttccagtgggtgtgaatttcatccaaacggagggcggttccgtttttgatcttcaaaccaatcatacacgcacacggtaatc 25762043  T
Q  186 cgtaagtgatcgaactcaaacaaccac 212  Q
    ||||||||||| |||||||||||||||    
T  25762042 cgtaagtgatcaaactcaaacaaccac 25762016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 20234852 - 20235015
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| |||||||||||||||||||| ||||| || || ||||| |||||| |||||| ||||  |||||||||||||||  |||||  || |||||| ||    
T  20234852 cctcgtactcgaacctcaacctctttcagtgggtgtgaatttcttccaaaaggatggtggttccgttcttgatcttcaaaccaatcatacacgcacacgg 20234951  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     || |||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  20234952 taacccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 20235015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 31059330 - 31059466
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 175  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||| ||||||||||  |||||||| |||||||||||||||| |||||| | || ||||    
T  31059330 atcaccctcttactcgaacctcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgttgttcttgatcttcattgcaattgtacacgca 31059429  T
Q  176 catggcaatccgtaagtgatcgaactcaaacaaccac 212  Q
    ||||| |||| ||||| |||  || | ||||||||||    
T  31059430 catggaaatctgtaagcgatgaaaattaaacaaccac 31059466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 34832140 - 34832303
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||||||||||||||||||| |||| || || |||||||||||||||| || ||||  ||| || ||||||||  |||||  || |||||| ||    
T  34832140 cctcgtactcgaacctcaacctcttcaagtgggtgtgaatttcatccaaacggagggcggttccgttttttatcttcaaaccaatcatacacgcacacgg 34832239  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||||||||| |||||||||||||||   | |||||||||| ||||| ||||| ||||    
T  34832240 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgcaccaatttcaagtgct 34832303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 31048642 - 31048795
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 175  Q
    ||||||||| ||||| |||||||||||| || ||||||| ||||| ||||||||||  |||||||| ||| |||||||||||| |||||||  |  ||||    
T  31048642 atcaccctcttactccaacctcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgttg-tcttgatcttcattgcaatcataaacgca 31048740  T
Q  176 catggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtac 228  Q
    ||||| |||  ||||| |||  || | |||||||  ||| |||||||||||||||    
T  31048741 catggaaatttgtaagcgatgaaaattaaacaacgacacttggatttatccgtac 31048795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 272
Target Start/End: Complemental strand, 11633456 - 11633263
Alignment:
Q  78 caccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcaca 177  Q
    |||| ||||| ||||||  ||||||||||| ||||||  ||||||||||||||||| ||||||  ||||| || |||||||||||||||| || ||||||    
T  11633456 caccatcatattcgaactgcaacctcttcccgtgagt--ggatttcatccaaacggttggggg-gttgttttttatcttcaatgcaatcgtacacgcaca 11633360  T
Q  178 tggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaa 272  Q
     | |||| ||||  ||||  || | |||||||  ||| | |||||| ||||| ||    ||||||||| |||||| |||| | ||||||||||||||    
T  11633359 cgacaattcgtatatgatgaaaattaaacaaccacacttagatttacccgtatcacacacaactgctcgatcaacctcgtttgcgagataatgcaaa 11633263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 23255163 - 23255032
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| |||||||||||||||||||||||||| || || ||||| |||||||| | || ||||  |||||||||||||||  |||||  || |||||| ||    
T  23255163 cctcgtactcgaacctcaacctcttccagtgggtgtgaatttcttccaaacgaagggtggttccgttcttgatcttcaaaccaatcatacacgcacacgg 23255064  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac 212  Q
     ||||||||||||||| |||||||||||||||    
T  23255063 taatccgtaagtgatcaaactcaaacaaccac 23255032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 756338 - 756180
Alignment:
Q  86 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 185  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||| || ||| | ||||||||||||||| | ||||  ||  ||||| || ||||    
T  756338 tactcgaacctcaacctcttccagtgagtgtgaatttcatcgaaacggagggtggtgtcgttcttgatcttcaaagtaatcatacatgcacacggtaatc 756239  T
Q  186 cgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
    |||| |||||| |||| ||||| ||||   | |||||||||||||||| ||||| ||||    
T  756238 cgtatgtgatcaaactgaaacacccacattttgatttatccgtaccaatttcaagtgct 756180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 19217551 - 19217388
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||||||||||||||||||||| || || || ||||| ||||||| || || ||||  |||||||||||||||  |||||  ||  ||||| ||    
T  19217551 cctcgtactcgaacctcaacctcttccaatgggtgtgaatttcttccaaacagagggtggttccgttcttgatcttcaaaccaatcatacaagcacacgg 19217452  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  19217451 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 19217388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 41255691 - 41255844
Alignment:
Q  91 gaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaa 190  Q
    ||||||||||||||||||||| || || |||||||||||||||| ||  |||  ||| |||||||||||  |||||  || |||||| || |||||||||    
T  41255691 gaacctcaacctcttccagtgggtgtgaatttcatccaaacggagggcagttccgtttttgatcttcaaaccaatcatacacgcacacggtaatccgtaa 41255790  T
Q  191 gtgatcgaactcaaacaacc--acctggatttatccgtaccaagttcaactgct 242  Q
    |||||| |||||||||||||  |  | |||||||||||||||| ||||| ||||    
T  41255791 gtgatcaaactcaaacaaccatattttgatttatccgtaccaatttcaagtgct 41255844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 15892392 - 15892266
Alignment:
Q  86 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 185  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| ||| || |||    |||||||||||| |  |||||  || |||||| || ||||    
T  15892392 tactcgaacctcaacctcttccaatgagtgtgaatttcatccaaatggagggcggtgccattcttgatcttcgaatcaatcatacacgcacacggtaatc 15892293  T
Q  186 cgtaagtgatcgaactcaaacaaccac 212  Q
    || |||||||| |||| ||||||||||    
T  15892292 cggaagtgatcaaactgaaacaaccac 15892266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 25010687 - 25010742
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaac 131  Q
    |||||| | ||||||||||| |||||||||||||||||| || |||||||||||||    
T  25010687 atcacctttatactcgaaccacaacctcttccagtgagtatgaatttcatccaaac 25010742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 25478838 - 25478947
Alignment:
Q  22 caaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatt 121  Q
    |||||| ||||| | ||||||||||||||| ||||||||||||||| |||      ||||||||||||||||||||||||| |||  |||||| ||||||    
T  25478838 caaatcccattccggtaacagagagatgtcgtccttcctatccttcgtat------caccctcatactcgaacctcaacctgttctggtgagtgtggatt 25478931  T
Q  122 tcatccaaacggatgg 137  Q
    | ||||||| ||||||    
T  25478932 taatccaaatggatgg 25478947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 242
Target Start/End: Complemental strand, 48095106 - 48094950
Alignment:
Q  88 ctcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccg 187  Q
    ||||||| ||||||||||||| || || || |||||||||||||||| || ||||   || || ||||||||  |||||  || |||||| || ||||||    
T  48095106 ctcgaacatcaacctcttccaatgggtgtgaatttcatccaaacggagggcggttccattttttatcttcaaaccaatcatacacgcacacggtaatccg 48095007  T
Q  188 taagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
    ||||||||| |||||||||||||||   | |||||||| ||||||| ||||| ||||    
T  48095006 taagtgatcaaactcaaacaaccacattttgatttatctgtaccaatttcaagtgct 48094950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 5158465 - 5158581
Alignment:
Q  76 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 175  Q
    |||||| ||||| ||||||  ||| ||||||| |||||| || |||||||||||||||| |||||| |||||||||||||||   ||||||||||  |||    
T  5158465 atcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggaggggggtgttgttcttgatcttcttggcaatcgcacatgca 5158564  T
Q  176 catggcaatccgtaagt 192  Q
    ||   ||||||||||||    
T  5158565 cacaacaatccgtaagt 5158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 52970661 - 52970823
Alignment:
Q  81 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 180  Q
    |||| ||||| ||||||||||||||| |||| || || ||||| |||||||||| || |||   |||||||||||||||  |||||  || | |||| ||    
T  52970661 cctcgtactcaaacctcaacctcttctagtgggtgtgaatttcttccaaacggagggtggtaccgttcttgatcttcaaaccaatcatacac-cacacgg 52970759  T
Q  181 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 242  Q
     ||||||||||||||| |||||||||||||||   | |||||||| ||||||| ||||| ||||    
T  52970760 taatccgtaagtgatcaaactcaaacaaccacattttgatttatctgtaccaatttcaattgct 52970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University