View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_2 (Length: 642)
Name: NF1144_high_2
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 7109049 - 7108631
Alignment:
| Q |
1 |
atttctaatcatcaaagaggatttattcaacaaagacaaatcaaagagtgtatcaacctcacttgagaggcaaccgatcttctccataatagatcttttg |
100 |
Q |
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| T |
7109049 |
atttctaagcagcaaagagaatttattcaacacagacaaatcaaagagtgcatcaacctcacttgagaggcacccgatcttcgccataatagatcttttg |
7108950 |
T |
|
| Q |
101 |
gaggtaatcttgcccttaaaatagacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaa |
200 |
Q |
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| T |
7108949 |
gaggtaatcttgcccttaaaatagacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaa |
7108850 |
T |
|
| Q |
201 |
catttgtaattggatagaggtcattttaaactcatattctctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgagg |
300 |
Q |
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| T |
7108849 |
catttggaattggatagaggtcattttaaactcatattgtctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgagg |
7108750 |
T |
|
| Q |
301 |
caggaatactgtatctatctctcctctccttttatgttttgccaaagaggtgatgagcagaagtatttctagattggtggatgaaggtaagctagacctt |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7108749 |
caggaatactgt----atctctcctctccttttatgttttgccaaagaggtgatgagcagaggtatttctagattggtggatgaaggtaagctagacctt |
7108654 |
T |
|
| Q |
401 |
atcaaggggtccagaaaaccata |
423 |
Q |
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||||||||||||||||||||||| |
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| T |
7108653 |
atcaaggggtccagaaaaccata |
7108631 |
T |
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