View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_20 (Length: 324)
Name: NF1144_high_20
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 316
Target Start/End: Complemental strand, 1328582 - 1328296
Alignment:
| Q |
30 |
tcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaat |
129 |
Q |
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| T |
1328582 |
tcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaat |
1328483 |
T |
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| Q |
130 |
ctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccatt |
229 |
Q |
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| T |
1328482 |
ctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccatt |
1328383 |
T |
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| Q |
230 |
gctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatgagtttggaggcatactttatttttgctcctatgct |
316 |
Q |
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| T |
1328382 |
gctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatgagtttggaggcatactttatttttgctcctatgct |
1328296 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 281
Target Start/End: Complemental strand, 1923852 - 1923654
Alignment:
| Q |
83 |
acacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttca |
182 |
Q |
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||||||| ||| |||||||| || |||||||||||||| || |||||||| | || | | | |||||||| |||| |||||| || | || ||||| | |
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| T |
1923852 |
acacaagaacttatgaatgctcgtgagtaacatgttaagcttagaatctctctaatgtgtctttcttcagctggattttcatcatgttttgttgctttaa |
1923753 |
T |
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| Q |
183 |
caatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatg |
281 |
Q |
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| T |
1923752 |
caatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatctttcactgctccaatggctcttcttaatg |
1923654 |
T |
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