View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1144_high_24 (Length: 270)
Name: NF1144_high_24
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 8458010 - 8458238
Alignment:
| Q |
30 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgc |
129 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458010 |
acaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgc |
8458109 |
T |
|
| Q |
130 |
tagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgttaccattatttgtagg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458110 |
tagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgttaccattatttgtagg |
8458209 |
T |
|
| Q |
230 |
aagctgtcaagagagaattttggcgtctg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8458210 |
aagctgtcaagagagaattttggcgtctg |
8458238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 6827279 - 6827204
Alignment:
| Q |
184 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaa-gctgtcaagagagaattttggcgtctg |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctg |
6827204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 6827330 - 6827278
Alignment:
| Q |
30 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
82 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6827330 |
acaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 9822865 - 9822940
Alignment:
| Q |
184 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaa-gctgtcaagagagaattttggcgtctg |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctg |
9822940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 9822814 - 9822866
Alignment:
| Q |
30 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
82 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9822814 |
acaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 25802704 - 25802634
Alignment:
| Q |
189 |
aggtattgaattcattttttcatgttaccattatttgtaggaa-gctgtcaagagagaattttggcgtctg |
258 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctg |
25802634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 18361263 - 18361200
Alignment:
| Q |
196 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctg |
258 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctg |
18361200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 18361302 - 18361265
Alignment:
| Q |
44 |
tctccaggtacccaacattttgtcctaagtatgttaaa |
81 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
18361302 |
tctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University