View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_28 (Length: 252)
Name: NF1144_high_28
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_28 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 8071587 - 8071365
Alignment:
| Q |
29 |
aggcttttatagatcaaatattgtaaataaaaatgtgtaagcaagggtaagttggtgagaaatgtgtacttataagtattgttagttcagcttctttacc |
128 |
Q |
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| T |
8071587 |
aggcttttatagatcaaatattgtaaataaaaatgtgcaagcaagggtgagttggtgagaaatgtgtacttataagtattgttagttcaacttctttacc |
8071488 |
T |
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| Q |
129 |
tatacattatccagctatacaaaatttaattagaactttattcttgttaacnnnnnnnnttagaacgttattgttggttaactaacctatatctgtattg |
228 |
Q |
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| T |
8071487 |
tatacattatccagctatacaaaatttaattagaactttattcttgttaac-aaaaaaattagaacgttattgttggttaactaacctatatctgtattg |
8071389 |
T |
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| Q |
229 |
aaatttgaaaggctgtattctcaa |
252 |
Q |
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| T |
8071388 |
aaatttgaaaagttgtgttctcaa |
8071365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 8040631 - 8040539
Alignment:
| Q |
33 |
ttttatagatcaaatattgtaaataaaaa-tgtgtaagcaagggtaagttggtgagaaatgtgtacttataagtattgttagttcagcttctt |
124 |
Q |
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| T |
8040631 |
ttttatagatgaaatattgcaactaaaaaatgtgtaagcaagggtgagttggtgagatttgtgtacttataagtattgttagttcaacttctt |
8040539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 8040508 - 8040445
Alignment:
| Q |
189 |
tagaacgttattgttggttaactaacctatatctgtattgaaatttgaaaggctgtattctcaa |
252 |
Q |
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| T |
8040508 |
tagaacgttattgttggttaactaactcatatctgcattgaaatttgaaaggctgtgttctcaa |
8040445 |
T |
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