View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_3 (Length: 604)
Name: NF1144_high_3
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 43076810 - 43076212
Alignment:
| Q |
1 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
100 |
Q |
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| T |
43076810 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
43076711 |
T |
|
| Q |
101 |
catttcatgaattgttgttctgattcttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtatgacatt |
200 |
Q |
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| T |
43076710 |
catttcatgaattgttgttctgattcttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtatgacatt |
43076611 |
T |
|
| Q |
201 |
gtgttacaatgggattttgtagaacaagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaagaatgttacaaa |
300 |
Q |
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| T |
43076610 |
gtgttacaatgggattttgtagaacaagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaagaatgttacaaa |
43076511 |
T |
|
| Q |
301 |
caaaagaaaaatgtaggtggagaatgtgatttggaactatacaaaaattggcttgtgtcatggttttatatacaagttatgttattcaggtgggaccata |
400 |
Q |
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| T |
43076510 |
caaaagaaaaatgtaggtggagaatgtgatttggaactatacaaaaattggcttgtgtcatggttttatatacaagttatgttattcaggtgggaccata |
43076411 |
T |
|
| Q |
401 |
tattaactgaagctgaatcagagaatcatttacagagagatagatagataggtcacgggtgcattgcatctattgatatatgttcaaagaaattaagaga |
500 |
Q |
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| T |
43076410 |
tattaagtgaagctgaatcagagaatcatttacagagagatagatagataggtcacgggtgcattgcatctattgatatatgttcaaagaaattaagaga |
43076311 |
T |
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| Q |
501 |
gatgaacaatctaaattctaaaccacaggcacgggacatgttgcactttttgttcataaaattgttcttttaatattttttgttttggttcatctcact |
599 |
Q |
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| T |
43076310 |
gatgaacaatctaaattctaaaccacaggcacaggacatgttgcactttttgttcataaaattgttcttttaatattttttgttttggttcatgtcact |
43076212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 33966781 - 33966889
Alignment:
| Q |
14 |
ttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacccatttcatgaatt |
113 |
Q |
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|||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
33966781 |
ttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacccatttcatgaatt |
33966880 |
T |
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| Q |
114 |
gttgttctg |
122 |
Q |
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| T |
33966881 |
gttgttctg |
33966889 |
T |
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Back To:
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