View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_high_7 (Length: 491)
Name: NF1144_high_7
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 37847174 - 37847581
Alignment:
| Q |
14 |
atatggttaggtcactagtatgcaggatgtccaagggttcgattcctactgctaacaaattctctatcctataattaattaactgctaatagttgtctat |
113 |
Q |
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| T |
37847174 |
atatggttaggtcactagtatgcaggatgtccaagggttcgattcctactgctaacaaattctctatcctataattaattaaccgctaatagttgtctat |
37847273 |
T |
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| Q |
114 |
aaaaagaagnnnnnnnn-cttcaagatcttttcattgagcctcctctcctattcatcaaagctttgccagcagtagaatccaatgagacctagacagtgt |
212 |
Q |
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| T |
37847274 |
aaaaagaagaaaaaaaaacttcaagatcttttcattgagcctcctctcctattcatcaaagctttgccagcagtagaatccaatgagacctagacagtgt |
37847373 |
T |
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| Q |
213 |
atgttgtcaaacagttataaaatgtgtgagtaatcggccacctcttaggtccatggtgtggacacaagtggagaatattctcatcttcaatggccaaact |
312 |
Q |
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| T |
37847374 |
atgttgtcaaacagttataaaatgtgtgagtaatcggccacctcttaggtccatggtgtggacacaagtggagaatattctcatcttcaatggccaaact |
37847473 |
T |
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| Q |
313 |
atatctgttgtttcaattgcttgtataataatctatctatgttgattctactttgagaactatcttcatgaactcgtatacaaagtaactaatagcagca |
412 |
Q |
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| T |
37847474 |
atatctgttgtttcaattgcttgtataataatctatctatgttgattctactttgagaactatcttcatgaactcgtatacaaagtaactaatagcagca |
37847573 |
T |
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| Q |
413 |
gatggtaa |
420 |
Q |
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| T |
37847574 |
gatggtaa |
37847581 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 33679840 - 33679794
Alignment:
| Q |
359 |
tctactttgagaactatcttcatgaactcgtatacaaagtaactaat |
405 |
Q |
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| T |
33679840 |
tctactttgagaacaatcttcataaactcatacacaaagtaactaat |
33679794 |
T |
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