View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_10 (Length: 491)
Name: NF1144_low_10
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 340628 - 340923
Alignment:
| Q |
14 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatc---ttataaagcttgtatgttttggtttattgttttttct |
110 |
Q |
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| T |
340628 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatcatcttatagagcttgtatgtttttgtttattgttttttct |
340727 |
T |
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| Q |
111 |
ttaagtactttatatt-atccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggaccttagatcctaatcc |
209 |
Q |
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| T |
340728 |
ttaagtactttatatccatccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggatcttagatcctaatcc |
340827 |
T |
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| Q |
210 |
tcctccctttccaacaaatagcaacagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt |
305 |
Q |
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| T |
340828 |
tcctccctttccaacaaatagcaacagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt |
340923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 351 - 464
Target Start/End: Original strand, 340965 - 341078
Alignment:
| Q |
351 |
aagaaccaacatcaaaatgattggtagacatcttaaaagtcaatttcaatccaaattttcaacctagaaagaagctcggtgatctctgaaaattccccca |
450 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
340965 |
aagaaccaacatcaaaatgattggtagacatcttgaaagtcaatttcaatccaaattttcaacctagaaagaagctcagtgatctctgaaaattccccca |
341064 |
T |
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| Q |
451 |
cacaaagcatgccg |
464 |
Q |
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| T |
341065 |
cacaaagcatgccg |
341078 |
T |
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