View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_12 (Length: 488)
Name: NF1144_low_12
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 53094798 - 53094363
Alignment:
| Q |
1 |
acatgttgtctgctgattgccaaggtttagaggcagtacacttgcaacgtggtttgtttggtgctggttaaaaatgcaa--------------------- |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53094798 |
acatgttgtctgctgattgccaaggtttagaggcagtacacttgcaacgtggtttgtttggtgctggttaaaaatgcaatttatgtttcataatttttct |
53094699 |
T |
|
| Q |
80 |
cctaaaattaaatttgtaattaataaatttagtctgaattatgcagctcaatactttaatttaatctttaagattttaaataaaattaattccgagtaac |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53094698 |
cctaaaattaaatttgtaattaataaatttagtctgaattatgcagctcaatactttaatttaacctttaagattttaaataaaattaattccgagtaac |
53094599 |
T |
|
| Q |
180 |
gaaatactaaattcaaaatactgtagtacaaagtagttgtgaattgaacgtactttgatggatttattattagttggtgagtctctttcctcatttcgaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53094598 |
gaaatactaaattcaaaatactgtagtacaaagtagttgtgaattgaacgtactttgatggatttattattagttggtgagtctctttcctcatttcgaa |
53094499 |
T |
|
| Q |
280 |
cagtcttattgctcttgcagaataacttcaatgttcctctaagaactacaactgttggatagcaagggcgcagaaaggtctgcccgaaggattcaattta |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53094498 |
cagtcttattgctcttgcagaataacttcaatgttcctctaagaactacaactgttggatagcaagggcgcagaaaggtcagcccgaaggattcaattta |
53094399 |
T |
|
| Q |
380 |
tgaaactattgattgtgattttgtgtgtgaaaatat |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
53094398 |
tgaaactattgattgtgattttgtgtgtgaaaatat |
53094363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Complemental strand, 53092622 - 53092591
Alignment:
| Q |
406 |
gtgaaaatattcatgaaactattttttatttt |
437 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
53092622 |
gtgaaaatattcatgaaactattttttatttt |
53092591 |
T |
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