View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_14 (Length: 477)
Name: NF1144_low_14
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 31617386 - 31616927
Alignment:
| Q |
16 |
tgtagataaaccctataatcaaaaaagctaaagcaataactaaagctaatattgtctttatcttgtaccttcctttgtctttggtctttcactttcaata |
115 |
Q |
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| T |
31617386 |
tgtagataaaccctataatcaaaaaagctaaagcaataactaaagctaatattgtctttatcttgtaccttcctttgtctttggtctttcactttcaata |
31617287 |
T |
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| Q |
116 |
ttcatcaataacacatcacctcttctacctttacccatctttccatgaatttcataccccaaaatattccatatgc-actccacatatgtttcactttga |
214 |
Q |
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| T |
31617286 |
ttcatcaataacacatcacctcttccacctttacccatctttccatgaatttcataccccaaaatattccatatgctactccacatatgtttcactttga |
31617187 |
T |
|
| Q |
215 |
tttgtagggtccttctccattttctttaattccatatttacaaaaagcatgttatgaatattcctttatatgcatgaaatgaattcatgcatattcatca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31617186 |
tttgtagggtccttctccattttctttaattccatatttacaaaaagcatgttatgaatattcctttatatgcatgaaatgcattcatgcatattcatca |
31617087 |
T |
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| Q |
315 |
tccactcatgaagcaatattaatttacataaaccttttttgtgggtcaatgtgatgg-nnnnnnngtggagtggaatctctttgtagtttcccatctatg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31617086 |
tccactcatgaagcaatattaatttacataaaccttttttgtgggtcaatgtgatggaaaaaaaagtggagtggaatctctttgtagtttcccatctatg |
31616987 |
T |
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| Q |
414 |
actctcactttgctatttttctcttcacaccaatgtagttgattttcattcatctcactc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31616986 |
actctcactttgctatttttctcttcacaccaatgtagttgattttcattcatgtcactc |
31616927 |
T |
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