View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_16 (Length: 469)
Name: NF1144_low_16
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 31617732 - 31617307
Alignment:
| Q |
30 |
attaaaacttaaaattcgtttgtattaaactttatatatatcctttaaagttcaaagaaagaaaataaaatgataaatccaagagtaaatcttttgaaag |
129 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31617732 |
attaaaacttaaaattcgtttgtattaaactttaaatatattctttaaagttcaaacaaagaaaataaa-tgataaatccaagagtaaatcttttgaaag |
31617634 |
T |
|
| Q |
130 |
taattaagtagtacatataattgtacttttgtaaattggtagcactacaacaagtcctagctagatggttgatatatttatttgtttatttatttctctc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31617633 |
taattaagtagtacatataattgtacttttgtaaattggtagcactacaacaagtcctagctagatggttgatatatttatttgtttatttatttctttc |
31617534 |
T |
|
| Q |
230 |
tttcaaaaactaacttgtccttccgtattcattaaggnnnnnnnnnncctaaacctaccattcctttattgtgtgctctactttatgcaaaagagttgaa |
329 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31617533 |
tttcaaaaactaacctgtccttccgtattcattaaggaaaaaaaaaacctaaacctaccattcctttattgtgtgctctactttatgcaaaagagttgaa |
31617434 |
T |
|
| Q |
330 |
gactacttttattgaactccatgtgcttcactcttgctcaaaacccttgtagataaaccctataatcaaaaaagctaaagcaataactaaagctaatatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31617433 |
gactacttttattgaactccatgtgcttcactcttgctcaaaacccttgtagataaaccctataatcaaaaaagctaaagcaataactaaagctaatatt |
31617334 |
T |
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| Q |
430 |
gtctttatcttgtaccttcctttgtct |
456 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31617333 |
gtctttatcttgtaccttcctttgtct |
31617307 |
T |
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