View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1144_low_18 (Length: 454)

Name: NF1144_low_18
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1144_low_18
NF1144_low_18
[»] chr1 (1 HSPs)
chr1 (42-452)||(8458195-8458611)
[»] chr7 (1 HSPs)
chr7 (42-147)||(25802572-25802678)
[»] chr2 (1 HSPs)
chr2 (42-140)||(18361145-18361244)
[»] chr8 (1 HSPs)
chr8 (42-139)||(6827150-6827248)
[»] chr6 (1 HSPs)
chr6 (42-139)||(9822896-9822994)
[»] chr3 (1 HSPs)
chr3 (60-139)||(27963964-27964043)
[»] chr5 (8 HSPs)
chr5 (6-46)||(30005718-30005758)
chr5 (6-46)||(30071226-30071266)
chr5 (7-46)||(29949413-29949452)
chr5 (7-46)||(29999280-29999319)
chr5 (7-46)||(29962971-29963010)
chr5 (7-46)||(30011788-30011827)
chr5 (13-46)||(30045403-30045436)
chr5 (13-46)||(29943745-29943778)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 42 - 452
Target Start/End: Original strand, 8458195 - 8458611
Alignment:
Q  42 accattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458195 accattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagt 8458294  T
Q  142 cacatttgtagataatcatgatactggctcaactcaggttcttagttcactatttctcaaaataacacactgaaatacatgctcaagtgggggtgtgtat 241  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458295 cacatttgtagataatcatgatactggctcaactcaggtttttagttcactatttctcaaaataacacactgaaatacatgctcaagtgggggtgtgtat 8458394  T
Q  242 ggtcagcgcaaatttatatgcatttttcttatttcgtatggaaactacaagcctggttatggtataattgatttatgtaaaattaattttgcatttggaa 341  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458395 ggtcagcgcaactttatatgcatttttcttatttcgtatggaaactacaagcctggttatggtataattgatttatgtaaaattaattttgcatttggaa 8458494  T
Q  342 ataaattttgctatgtgaattgaaatattaaggaatagaagggatatttaggtttaaaggttactgattaataagg------ttacccactgcgaatatg 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||    
T  8458495 ataaattttgctatgtgaattgaaatattaaggaatagaagggatatttaggtttaaaggttactgattaataaggtgccttttaaccactgcgaatatg 8458594  T
Q  436 acatattattcgacatc 452  Q
    |||| || ||| |||||    
T  8458595 acattttcttctacatc 8458611  T

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Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 25802678 - 25802572
Alignment:
Q  42 accattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcag 140  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25802678 accattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcag 25802579  T
Q  141 tcacatt 147  Q
    |||||||    
T  25802578 tcacatt 25802572  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 18361244 - 18361145
Alignment:
Q  42 accattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcag 140  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18361244 accattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaatggtggccttcaagatcag 18361145  T

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Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 6827248 - 6827150
Alignment:
Q  42 accattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 139  Q
    |||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6827248 accattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 6827150  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 9822896 - 9822994
Alignment:
Q  42 accattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 139  Q
    |||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9822896 accattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 9822994  T

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Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
Q  60 ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27964043 ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca 27963964  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 30005758 - 30005718
Alignment:
Q  6 agttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30005758 agttggaacttgaccaagttgtaaggacatgattggaccat 30005718  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 30071226 - 30071266
Alignment:
Q  6 agttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30071226 agttggaacttgaccaagttgtaaggacatgattggaccat 30071266  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 29949452 - 29949413
Alignment:
Q  7 gttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29949452 gttggaacttgaccaagttgtaaggacatgattggaccat 29949413  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 29999319 - 29999280
Alignment:
Q  7 gttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29999319 gttggaacttgaccaagttgtaaggacatgattggaccat 29999280  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 29963010 - 29962971
Alignment:
Q  7 gttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  29963010 gttggaacttgaccaagttgtaaggacatgattgaaccat 29962971  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 30011788 - 30011827
Alignment:
Q  7 gttggaacttgaccaagttgtaaggacatgattggaccat 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30011788 gttggaacttgaccaagttgtaaggacatgattgaaccat 30011827  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 30045403 - 30045436
Alignment:
Q  13 acttgaccaagttgtaaggacatgattggaccat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  30045403 acttgaccaagttgtaaggacatgattggaccat 30045436  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 29943778 - 29943745
Alignment:
Q  13 acttgaccaagttgtaaggacatgattggaccat 46  Q
    |||||||| |||||||||||||||||||||||||    
T  29943778 acttgacctagttgtaaggacatgattggaccat 29943745  T

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