View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_20 (Length: 427)
Name: NF1144_low_20
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 13614570 - 13614939
Alignment:
| Q |
29 |
taaatctgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtac |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13614570 |
taaatctgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtac |
13614669 |
T |
|
| Q |
129 |
tacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13614670 |
tacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttg |
13614769 |
T |
|
| Q |
229 |
ccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgcttagaat |
328 |
Q |
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| T |
13614770 |
ccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgcttagaaa |
13614869 |
T |
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| Q |
329 |
tcctatggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaa |
398 |
Q |
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| T |
13614870 |
tcctaaggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaa |
13614939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 396
Target Start/End: Original strand, 31246803 - 31247167
Alignment:
| Q |
29 |
taaatctgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtac |
128 |
Q |
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| T |
31246803 |
taaatctctcaggctgtccaaatttacttaataataagatgttagagagacaaaggcaaaatgaacatttggagatgcttgatattaa---agaatgtac |
31246899 |
T |
|
| Q |
129 |
tacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttg |
228 |
Q |
| |
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||| ||||||||| |||| |||| |||| ||||||||||||||| |||||| |||||| |||||||||| || |||||||| |||||||||||||| |
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| T |
31246900 |
tactcaataccaaccaacatccttcatctacaaagttctaaagccgcactttccattttctttttttcgaaaacgcgaagattcggttggtttattgttg |
31246999 |
T |
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| Q |
229 |
ccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgcttagaat |
328 |
Q |
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||||| |||||| | | |||| | |||||| ||||||| ||||||||||||||||| ||||||||||| |||| ||||| || |||| ||||||||| |
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| T |
31247000 |
ccttcgttgtcttgtctgtcatgtctgcaatatcttgacctaagtttctgcaatctttttcaaatccctaatgcaattggaaggctacattgcttagaaa |
31247099 |
T |
|
| Q |
329 |
tcctatggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttaga |
396 |
Q |
| |
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| ||| |||| || |||| |||||||||||||| |||| || | |||||||||||||||||| |
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| T |
31247100 |
ttctaaatgtgggaggaaacaattttgttactctaccttctagcatcaaggaactttccaaacttaga |
31247167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 31212621 - 31212756
Alignment:
| Q |
261 |
tcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgcttagaattcctatggttgggtgggaacagatttgttact |
360 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||| ||||||| ||| || ||||||||| | ||| ||| || ||||||| ||||| || |
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| T |
31212621 |
tcttgacctaagtttctgcaatcttcttcaagtccctaatgcaattgggttgttgcattgcttagaaatgctaaagttaggggggaacaattttgtgaca |
31212720 |
T |
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| Q |
361 |
ctaccgcctagtatagaagaactttccaaacttaga |
396 |
Q |
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||||| |||| || || ||||||||||||||||| |
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| T |
31212721 |
ctaccttctagcatgaaataactttccaaacttaga |
31212756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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