View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_21 (Length: 427)
Name: NF1144_low_21
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 5469337 - 5469739
Alignment:
| Q |
18 |
acagacactagatctgcacccaaaatcttaaggtaatatgtatatgagtacctatct-acatccaacattgaccattcatttatagtcgatgttgaatta |
116 |
Q |
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| T |
5469337 |
acagacactggatatgcacccaaaatcataaggtaat--------gagtacctatcttacatccaacattgaccattcatttatagtcgatgttgaatta |
5469428 |
T |
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| Q |
117 |
accactcacacttgaattcaacaatccaannnnnnnttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
216 |
Q |
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| T |
5469429 |
accactcacacttgtattcaacaatccaacccccccttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
5469528 |
T |
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| Q |
217 |
cctcaagtgagtcttctacatcttatatttgatctaacaccatgatctacttccactctccgaccaagttgaagcaagcccttaatacaatttgttggat |
316 |
Q |
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| T |
5469529 |
cctcaagtgagtcttctacatcttatacttgatctaacaccatgatctacttccactctccggccaagttgaagcaagcccttaatacaatttgttggat |
5469628 |
T |
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| Q |
317 |
agtgtccatgtgagggcagcatcgagcaaacatatcaatactataggaccaccatgagaggataatgtcacattttcacctaaaaactcaagacactaga |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5469629 |
agtgtccatgtgagggcagcatcgagcaaacatgtcaatactataggaccatcaagagaggataatgtcacattttcacctaaaaactcaagacactaaa |
5469728 |
T |
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| Q |
417 |
aatatatgggt |
427 |
Q |
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| T |
5469729 |
aatatatgggt |
5469739 |
T |
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