View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_23 (Length: 410)
Name: NF1144_low_23
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 59 - 348
Target Start/End: Complemental strand, 6862681 - 6862392
Alignment:
| Q |
59 |
cctgacacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatgtcaatctggcacactaa |
158 |
Q |
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| T |
6862681 |
cctgacacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatatcaatctggcacactaa |
6862582 |
T |
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| Q |
159 |
tatttaagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctccttta |
258 |
Q |
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| T |
6862581 |
tatttaagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctccttta |
6862482 |
T |
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| Q |
259 |
ctttacagtcacaagtctgtttttaatgtgataccaagcgtcggcatatcctaaggtatatatttcaacccaaaatcaaacccttctctg |
348 |
Q |
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| T |
6862481 |
ctttacagtcacaagtctgtttttaatgtaataccaagcgtcggcatatcctaaggtacatatttcaacccaaaatcaaacccttctctg |
6862392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 6857605 - 6857503
Alignment:
| Q |
210 |
ataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttt-taatgtgataccaagcgtcggcatatc |
308 |
Q |
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| T |
6857605 |
ataagcaaatgtgctaatgacaccacataaaaaactattatcaccatcactttaccgtcactaatctgttttctaatgtgataccaaccgtcggcgtatc |
6857506 |
T |
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| Q |
309 |
cta |
311 |
Q |
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||| |
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| T |
6857505 |
cta |
6857503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 6857768 - 6857700
Alignment:
| Q |
67 |
ataaacacatgatttgataccaataattatgaatcttgcaat-gaacatttagaggtttcaaaatggca |
134 |
Q |
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| T |
6857768 |
ataaacacatgatatgaaaccaataattatgaattttgtagtaaaacatttgaaggtttcaaaatggca |
6857700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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