View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1144_low_26 (Length: 376)
Name: NF1144_low_26
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 63 - 349
Target Start/End: Complemental strand, 3881771 - 3881481
Alignment:
| Q |
63 |
aaatccaaaaacattaataatataattatttaaacacgagatagacacaaataagctcttctgaacaacttctgtgtgtatggtagtataacatcacaac |
162 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3881771 |
aaatccaaaaacattaataatataagtatttaaacacgagatagacacaaataagctcttctgaacaacttctgtgtgtatggtagtataacatcacaac |
3881672 |
T |
|
| Q |
163 |
ttcgctaggtttatcaaactaaataaccaccacttctggagatttgttttgaggatgggagga--ggttctccgctactattatacaatctgtaatatgc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| || |||||| ||| |
|
|
| T |
3881671 |
ttcgctaggtttatcaaactaaataaccaccacttctggagatttgttttgaggatgggaggagcggttcttcactactattatactatttgtaatttgc |
3881572 |
T |
|
| Q |
261 |
tagacagt-aaaaacatgtgaactaaaagatgatg-cttttaccttaagttgtttacaagagtcaaaaacaggctgcagagtcaccaagaa |
349 |
Q |
| |
|
||||||| ||||| |||| |||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3881571 |
aagacagtaaaaaatatgtaaactaaaatataatgttttttacctttagttgtttacaagagtcaaaaacaggctgcagagtcaccaagaa |
3881481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 3867896 - 3867726
Alignment:
| Q |
179 |
aactaaataaccaccacttctggagatttgttttgaggatgggaggag--gttctccgctactattatacaatctgtaatatgctagacagtaaaaac-a |
275 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||||||||||| ||||| | |||||||||||| || |||||| ||| |||||||||||| | |
|
|
| T |
3867896 |
aactaaataaccctcacttccgtagatttgttttgaggatgggaggagcggttcttcactactattatactatttgtaatttgcaagacagtaaaaaata |
3867797 |
T |
|
| Q |
276 |
tgtgaactaaaagatgatgctttt-accttaagttgtttacaagagtcaaaaacaggctgcagagtcacca |
345 |
Q |
| |
|
||| |||||||| || ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3867796 |
tgtaaactaaaatataatgttttttacctttagttgtttacaagaatcaaaaacaggctgcagagtcacca |
3867726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University