View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1144_low_27 (Length: 373)
Name: NF1144_low_27
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 2225102 - 2225396
Alignment:
| Q |
30 |
cgatcagcaagagtagattttccatgatcaacatgtgcaatgattgaaaaatttctcacaagctctggtgggtactgactcaaatctataatggcttttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225102 |
cgatcagcaagagtagattttccatgatcaacatgtgcaatgattgaaaaatttctcacaagctctggtgggtactgactcaaatctataatggcttttt |
2225201 |
T |
|
| Q |
130 |
ctttggtgtagttttggcgtgactgtgtacagaaaagtgcacgtgtaatggaaaatctttcatgggttattctgtttgataaagggttgaaattgaagaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
2225202 |
ctttggtgtagttttggcgtgactgtgtacagaaaagtgcacgtgtaatggaaaatcgttcatgggttattctacttgataaagggttgaaattgaataa |
2225301 |
T |
|
| Q |
230 |
caatgaaacgtaatttgattgttttaaggtttttgatgcttttctaagaaaacccatttcgggttttttgaggttgtttggttactgaatctgtg |
324 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225302 |
caatgaaacatagtttgattgttttaaggtttttgatgcttttctaagaaaacccatttcgggttttttgaggttgtttggttactgaatctgtg |
2225396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University