View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_28 (Length: 357)
Name: NF1144_low_28
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Complemental strand, 47852365 - 47852017
Alignment:
| Q |
9 |
agcatagggtttatttaaattctggttttcggataatcgcatgaattgttactttcctagttgtgcatgttctaactgatttggtgaaactcaatatgta |
108 |
Q |
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| T |
47852365 |
agcatagggtttatttaaattctggttttcggataatcgcatgaattgttactttcctagttgtgcatgttctaactgatttggtgaaactcaatatgta |
47852266 |
T |
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| Q |
109 |
ctatattctatctgttatatttgcaactggtcaaacgatctcgatctaacttggatttcaatttcttagggcaaaaccatttcaacgcctgctatcagtg |
208 |
Q |
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| T |
47852265 |
ctatattctatctgttatatttgcaactggtcaaacgatctcaatctaacttggatttcaatttcttagggcaaaaccatttcaacgcctgctatcagtg |
47852166 |
T |
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| Q |
209 |
gaaccatactttccggaatcacaagaaaaagtgtcattgaaattgccagtgatttgggttatcaggtagtattataccataatcgtttaatctttgtggc |
308 |
Q |
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| T |
47852165 |
gaaccatactttccggaatcacaagaaaaagtgtcattgaaattggcagtgatttgggttatcaggtagtattataccataatcgtttaatctttgtggc |
47852066 |
T |
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| Q |
309 |
tactatatgattatgagacatcataaacattctgcattttgttgctttc |
357 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47852065 |
tactttatgattatgagacatcataaacattctgcattttgttgctttc |
47852017 |
T |
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