View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1144_low_35 (Length: 311)

Name: NF1144_low_35
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1144_low_35
NF1144_low_35
[»] chr5 (4 HSPs)
chr5 (1-85)||(15474988-15475072)
chr5 (164-240)||(15474833-15474909)
chr5 (7-85)||(15467437-15467515)
chr5 (164-240)||(15467282-15467358)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15475072 - 15474988
Alignment:
Q  1 atcactgcaccaaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttcacaagccaaaaatgttgaactct 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15475072 atcactgcaccaaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttcacaagccaaaaatgttgaactct 15474988  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 15474909 - 15474833
Alignment:
Q  164 tcacttgcattgtgtatgattcttttctaccttgggcacttgatgtggctaaacaacatcggatctgtggtgctgct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  15474909 tcacttgcattgtgtatgattcttttctaccttgggcacttgatgtggctaaacaacatcggatttatggtgctgct 15474833  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 15467515 - 15467437
Alignment:
Q  7 gcaccaaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttcacaagccaaaaatgttgaactct 85  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15467515 gcaccaaacgtatccgtcgaaccaatctctgatgggttcgacgaatccggttttacacaagccaacaatgttgaactct 15467437  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 15467358 - 15467282
Alignment:
Q  164 tcacttgcattgtgtatgattcttttctaccttgggcacttgatgtggctaaacaacatcggatctgtggtgctgct 240  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| | || | ||||||||||    
T  15467358 tcacatgcattgtctatgattcttttctaccttgggcacttgatgttgctaaacaacatggtatttatggtgctgct 15467282  T

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