View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_36 (Length: 310)
Name: NF1144_low_36
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 8382022 - 8382299
Alignment:
| Q |
1 |
cgtaccgtaaatttgaacaagttgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatc |
100 |
Q |
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| T |
8382022 |
cgtaccgtaaatttgaacaagttgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggctttctttcccatc |
8382121 |
T |
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| Q |
101 |
ttatatgaatccttcaagtccccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8382122 |
ttatatgaatccttcaagtccccaagcacaagtctataagaatttccattacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaa |
8382221 |
T |
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| Q |
201 |
tccaattcagcactctccatgtgtataccaaaccaagtgttacagtgatgagaattatgccataatatatggccaatg |
278 |
Q |
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| T |
8382222 |
tccaattcagtactctccatgtgtatactaaaccaagtgttacagtgatgagaattatgccataatatatggccaatg |
8382299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 30381794 - 30381559
Alignment:
| Q |
23 |
tgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatcttatatgaatccttcaagtccc |
122 |
Q |
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||||| ||||||||||| ||||| || |||||||||| || || | ||||| ||| |||||||||| ||| |||||||| | ||| || | ||||| |
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| T |
30381794 |
tgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctttttccatcttaaaaagatcttttatgtccc |
30381695 |
T |
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| Q |
123 |
caagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatgt |
222 |
Q |
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| T |
30381694 |
caagcaaaatcctatatgaatttccttgaaagccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaactcaacaccttccatgc |
30381595 |
T |
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| Q |
223 |
gtataccaaaccaagtgttacagtgatgagaattat |
258 |
Q |
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||| |||||||||||||||| ||||||||||||| |
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| T |
30381594 |
ccatatcaaaccaagtgttacaatgatgagaattat |
30381559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 23785596 - 23785733
Alignment:
| Q |
122 |
ccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatg |
221 |
Q |
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||||||| ||||||||||| || |||| | |||||||||| ||| |||||||||| | |||||||||||| ||| |||||||||| || ||||||| |
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| T |
23785596 |
ccaagcaaaagtctataagggttcccttgaaggccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaataccctccatg |
23785695 |
T |
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| Q |
222 |
tgtataccaaaccaagtgttacagtgatgagaattatg |
259 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
23785696 |
cgtataccaaaccaaatgtcacagtgatgagaattatg |
23785733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 23766136 - 23765999
Alignment:
| Q |
122 |
ccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatg |
221 |
Q |
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||||||| ||||||||||| || |||| | |||||||||| ||| |||||||| | | |||||||||||| ||| |||||||||| || ||||||| |
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| T |
23766136 |
ccaagcaaaagtctataagggttcccttgaaggccttgttctcttaaaagcttctccatcttctttggcttcagccacatccaattcaataccctccatg |
23766037 |
T |
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| Q |
222 |
tgtataccaaaccaagtgttacagtgatgagaattatg |
259 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
23766036 |
cgtataccaaaccaaatgtcacagtgatgagaattatg |
23765999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 23788833 - 23788730
Alignment:
| Q |
155 |
ccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatgtgtataccaaaccaagtgttacagtgatgagaa |
254 |
Q |
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|||||||||| ||| |||||||||| | |||||||||||| ||| |||||||||| | |||||| |||||||||||||| ||| ||||||||||||| |
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| T |
23788833 |
ccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaatgccctccatacgtataccaaaccaaatgtcacagtgatgagaa |
23788734 |
T |
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| Q |
255 |
ttat |
258 |
Q |
| |
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|||| |
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| T |
23788733 |
ttat |
23788730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 30391257 - 30391075
Alignment:
| Q |
31 |
gtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatcttatatgaatccttcaagtccccaagcaca |
130 |
Q |
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||||||||||||||| || | |||||||| || || | ||| | |||||||||||||| |||| |||| ||| | | ||||||| ||| |||| | | |
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| T |
30391257 |
gtagggaatgacacgtggcgtgatatcatcggagaggttcatagatttggatttggcttccttttccatgttaaaatactccttcatgtctccaactaaa |
30391158 |
T |
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| Q |
131 |
agtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcac |
213 |
Q |
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| T |
30391157 |
agcctatattgattccctttaagtccttgttctcttaagagcttctctagcttctttggcttcaaccataacaaattcagcac |
30391075 |
T |
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