View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_37 (Length: 310)
Name: NF1144_low_37
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 1328296 - 1328582
Alignment:
| Q |
9 |
agcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagc |
108 |
Q |
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| T |
1328296 |
agcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagc |
1328395 |
T |
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| Q |
109 |
agcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaa |
208 |
Q |
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| T |
1328396 |
agcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaa |
1328495 |
T |
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| Q |
209 |
catgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttga |
295 |
Q |
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| T |
1328496 |
catgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttga |
1328582 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 1923654 - 1923852
Alignment:
| Q |
44 |
cattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgt |
143 |
Q |
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||||||||| |||| |||| ||||| || ||||| ||||||||||| |||||| || |||||||| ||||| | | ||| ||| | ||||| ||||| |
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| T |
1923654 |
cattaagaagagccattggagcagtgaaagatcaaacaagcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgt |
1923753 |
T |
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| Q |
144 |
gaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgt |
242 |
Q |
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| T |
1923754 |
taaagcaacaaaacatgatgaaaatccagctgaagaaagacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgt |
1923852 |
T |
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