View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_38 (Length: 301)
Name: NF1144_low_38
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_38 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 24277996 - 24278111
Alignment:
| Q |
93 |
tgtggctacattactattc----attcattcaagatatttctttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggt |
188 |
Q |
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| T |
24277996 |
tgtggctacattactattcattcattcattcaagatatttatttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggt |
24278095 |
T |
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| Q |
189 |
gtggtgcacatgtttg |
204 |
Q |
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|||||||||||||||| |
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| T |
24278096 |
gtggtgcacatgtttg |
24278111 |
T |
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Target: scaffold0003 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 325537 - 325639
Alignment:
| Q |
102 |
attactattcattcattcaagatatttctttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggtgtggtgcacatgt |
201 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
325537 |
attactattcattcattcaagatatttattttaataaaatattcttccatgtttgaatcatgtagtcttcttttatccatcttcggtgtggtgcacatgt |
325636 |
T |
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| Q |
202 |
ttg |
204 |
Q |
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||| |
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| T |
325637 |
ttg |
325639 |
T |
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