View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_39 (Length: 293)
Name: NF1144_low_39
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_39 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 8042351 - 8042515
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8042351 |
tgcaggatctgtcttttatttctttaatgcacttggctctgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtct |
8042450 |
T |
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| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8042451 |
acaccggagaaaccatctaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
8042515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 7971362 - 7971198
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7971362 |
tgcaggatctgtctttaatttctttaatgcacttggctctgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtct |
7971263 |
T |
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| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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| T |
7971262 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttattgttgcatacattgttgttgc |
7971198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 8032447 - 8032611
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
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||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||| ||| |
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| T |
8032447 |
tgcagaatcagtctttaatttctttaatgcactcggctctgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatct |
8032546 |
T |
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| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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| T |
8032547 |
acacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgc |
8032611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 7978294 - 7978131
Alignment:
| Q |
73 |
gcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtcta |
172 |
Q |
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|||||| | |||||||| |||||||||||||| ||| || |||| ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| | |
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| T |
7978294 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga |
7978195 |
T |
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| Q |
173 |
cacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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|||| ||||||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| |
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| T |
7978194 |
caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttgc |
7978131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 2659 - 2496
Alignment:
| Q |
73 |
gcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtcta |
172 |
Q |
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|||| ||| |||||| |||||||||||||||| ||| || | || ||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
2659 |
gcagaatcagtctttaatttctttaatgcacttggctctatcgcgtttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtcta |
2560 |
T |
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| Q |
173 |
cacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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| T |
2559 |
cacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgc |
2496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 41381799 - 41381635
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
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|||||||||||||||| |||||||||||||||| || ||||||| ||||||| ||| ||||||| ||||||| |||| || ||| | ||||| || ||| |
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| T |
41381799 |
tgcaggatctgtctttaatttctttaatgcacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatct |
41381700 |
T |
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| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgc |
236 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
41381699 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttatctttgcctacatggttgttgc |
41381635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 43854448 - 43854550
Alignment:
| Q |
111 |
tgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtctacacctgagaaaccatcaaagggtccaatgtggaaagga |
210 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||||||| |||| |
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| T |
43854448 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
43854547 |
T |
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| Q |
211 |
gtt |
213 |
Q |
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||| |
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| T |
43854548 |
gtt |
43854550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 14198244 - 14198106
Alignment:
| Q |
74 |
caggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtctac |
173 |
Q |
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||||| ||||||||| |||||| ||||| || || | ||| || ||||| | ||| ||||||| |||||| | || ||||||||||||||||| ||||| |
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| T |
14198244 |
caggaactgtctttggtttcttcaatgcccttggagatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctac |
14198145 |
T |
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| Q |
174 |
acctgagaaaccatcaaagggtccaatgtggaaaggagt |
212 |
Q |
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||| || |||||||| |||||||||||||||| |||||| |
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| T |
14198144 |
accggaaaaaccatctaagggtccaatgtggagaggagt |
14198106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 22550592 - 22550647
Alignment:
| Q |
154 |
caagcaacaattccgtctacacctgagaaaccatcaaagggtccaatgtggaaagg |
209 |
Q |
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|||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
22550592 |
caagcaacaattccatcaacacctgagaaaccatcaaaaataccaatgtggaaagg |
22550647 |
T |
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