View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1144_low_4 (Length: 582)

Name: NF1144_low_4
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1144_low_4
NF1144_low_4
[»] chr1 (3 HSPs)
chr1 (1-553)||(39100465-39101008)
chr1 (3-108)||(25145578-25145683)
chr1 (32-112)||(35772179-35772259)
[»] chr6 (2 HSPs)
chr6 (3-95)||(6400726-6400818)
chr6 (32-94)||(17147767-17147829)
[»] chr2 (2 HSPs)
chr2 (3-94)||(15124655-15124746)
chr2 (23-112)||(40149092-40149179)
[»] chr4 (1 HSPs)
chr4 (4-94)||(27634188-27634278)
[»] chr3 (2 HSPs)
chr3 (1-94)||(19954325-19954417)
chr3 (32-94)||(35038301-35038363)
[»] chr8 (4 HSPs)
chr8 (32-94)||(18004203-18004263)
chr8 (4-94)||(8084249-8084339)
chr8 (3-108)||(3157417-3157522)
chr8 (32-112)||(39960107-39960186)
[»] chr7 (3 HSPs)
chr7 (32-94)||(29469755-29469817)
chr7 (32-93)||(21861444-21861505)
chr7 (23-95)||(36277097-36277169)
[»] chr5 (3 HSPs)
chr5 (37-95)||(15590093-15590151)
chr5 (1-94)||(32908825-32908917)
chr5 (32-108)||(11896008-11896084)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 39100465 - 39101008
Alignment:
Q  1 atctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatat 100  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||| |||||    
T  39100465 atctgctatcaggtttttattatcgggtcacccactatttatgtccacgaatcaaacccaatagaactggtcgtgagagggggtgttaagagtccaatat 39100564  T
Q  101 tggataggagataac-tgataatatatttatataagtggggagaattcttaccttagaatgccagttttatgttataagataatcagcattaatcaaagc 199  Q
    | ||||||||||||| ||| ||||||||||||||||||||   ||||||||| ||            ||||||||||||||||| | |||||||||||||    
T  39100565 ttgataggagataacctgacaatatatttatataagtgggagcaattcttacttt------------ttatgttataagataatgaacattaatcaaagc 39100652  T
Q  200 cattactatattaagccgtcaattaaattaagaaatgatagtgctgatatcgttttgagcattgacatagtgaatggtatatttccattactatatagta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39100653 cattactatattaagccgtcaattaaattaagaaatgatagtgctgatatcgttttgagcattgacatagtgaatggtatatttccattactatatagta 39100752  T
Q  300 ttattactactaagtgctaagttagatgcaaacgtgcatcacaaacttcaaatgaaatataggnnnnnnnttaaaccctatcttagaacagtaatttttt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  39100753 ttattactactaagtgctaagttagatgcaaacgtgcatcacaaacttcaaatgaaatataggaaaaaaaataaaccctatcttagaacagtaatttttt 39100852  T
Q  400 aagagaatctttaggactccgggtcacactctgcctccttgtctacatacatgtctttgagattggattggaaggatttcccatgaacctannnnnnnaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  39100853 aagagaatctttaggactccgggtcacactctgcctccttgtctacatacatgtctttgagattggattggaaggatttcccatgaacctatttttttaa 39100952  T
Q  500 tccagattagttgtctaatctttatttat-tttacaatcac-aaggttgctaattc 553  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  39100953 tccagattagttgtctaatctttatttatatttacaatcactaaggttgctaattc 39101008  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 25145683 - 25145578
Alignment:
Q  3 ctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattg 102  Q
    ||||||||||||||   || ||||| || |||| ||| ||||||||||||||| |  |||||| ||||| || || ||| ||||||||||||| | || |    
T  25145683 ctgctatcaggtttccgttatcggaccacccaccattaatgtccacgaatcaagctcaatagtgctggtcgtgagggggtgtgttaagagtctcacatcg 25145584  T
Q  103 gatagg 108  Q
    ||||||    
T  25145583 gatagg 25145578  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 35772179 - 35772259
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattggataggagat 112  Q
    |||| ||||||||||||||| ||| || |||||| | |||||| || ||| ||||||||||||  | || |||||||||||    
T  35772179 ccaccatttatgtccacgaaccaagcccaatagtgccggttgtgagcgggtgtgttaagagtcccacatcggataggagat 35772259  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 6400818 - 6400726
Alignment:
Q  3 ctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtct 95  Q
    |||||||||||||| |  | ||||| || |||| ||||||||||||||| ||| || |||||| ||||| || || |||||||||||||||||    
T  6400818 ctgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtgttaagagtct 6400726  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 17147829 - 17147767
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||| ||||||||||||||| ||| || |||||| |||||||| || ||| ||||||||||||    
T  17147829 ccaccatttatgtccacgaaccaagcccaatagtgctggttgtgagggggtgtgttaagagtc 17147767  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 15124746 - 15124655
Alignment:
Q  3 ctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||||||||||||||  || |||| |||||||| ||||||||||||||| |||  | |||||| |||||||| || ||  ||||||||||||    
T  15124746 ctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaaccaagtccaatagtgctggttgtgaggggatgtgttaagagtc 15124655  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 40149179 - 40149092
Alignment:
Q  23 tcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattggataggagat 112  Q
    ||||| || |||||||||||||||||||| ||| || |||||| ||||| ||  ||||| ||||||||||||| | || |||||| ||||    
T  40149179 tcggaccacccactatttatgtccacgaaccaagcccaatagtgctggtcgt--gagggtgtgttaagagtctcacatcggatagaagat 40149092  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 27634278 - 27634188
Alignment:
Q  4 tgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    ||||||||||||| |  | ||||| || ||||| |||||||||||||| ||| || |||||| ||||| || || ||||||||||||||||    
T  27634278 tgctatcaggtttctgctatcggaccacccactgtttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtgttaagagtc 27634188  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19954417 - 19954325
Alignment:
Q  1 atctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||||||||||||||||   | || || || |||| ||||||||||||||| ||| || |||||||||||| || || ||||||||||||||||    
T  19954417 atctgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtgag-gggggtgttaagagtc 19954325  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 35038363 - 35038301
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||| ||||||||||||||| ||| || |||||||||||| || || ||| ||||||||||||    
T  35038363 ccaccatttatgtccacgaaccaagcccaatagtactggtcgtgagggggtgtgttaagagtc 35038301  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 18004263 - 18004203
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||| ||||||||||||||| ||| ||||||||| ||||| ||  ||||||||||||||||||    
T  18004263 ccaccatttatgtccacgaaccaagcctaatagtgctggtcgt--gagggggtgttaagagtc 18004203  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 8084249 - 8084339
Alignment:
Q  4 tgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    ||||||||||||||   | | |||||| |||| ||||||||||||||| ||| || |||||| ||||| || || ||| ||||||||||||    
T  8084249 tgctatcaggttttcgctattggatcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtc 8084339  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 3157522 - 3157417
Alignment:
Q  3 ctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattg 102  Q
    |||||||||||||||   | ||||  || |||| ||||||||||||||| ||| || |||||| ||||| || || ||| ||||||||||||| | || |    
T  3157522 ctgctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagtgggtgtgttaagagtctcacatgg 3157423  T
Q  103 gatagg 108  Q
    ||||||    
T  3157422 gatagg 3157417  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 39960107 - 39960186
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattggataggagat 112  Q
    |||| ||||||||||||||| ||| || |||||| ||||| || || ||||||||||||||||  | || |||||||||||    
T  39960107 ccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgag-gggggtgttaagagtcccacatcggataggagat 39960186  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 29469755 - 29469817
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||| ||||||||||||||||||| || |||||| ||||| || || ||| ||||||||||||    
T  29469755 ccaccatttatgtccacgaatcaagcccaatagtgctggtcgtgagggggtgtgttaagagtc 29469817  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 21861444 - 21861505
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagt 93  Q
    |||| ||||||||||||||| ||| ||||||||| ||||| || || ||| |||||||||||    
T  21861444 ccaccatttatgtccacgaaccaagcctaatagtgctggtcgtgagggggtgtgttaagagt 21861505  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 36277169 - 36277097
Alignment:
Q  23 tcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtct 95  Q
    ||||| || |||| ||||||||||||||| ||| || |||||| ||||| || || ||| |||||||||||||    
T  36277169 tcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtct 36277097  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 15590093 - 15590151
Alignment:
Q  37 atttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtct 95  Q
    ||||||||||||||| |||||| |||||| ||||| || || ||| |||||||||||||    
T  15590093 atttatgtccacgaaccaaacccaatagtgctggtcgtgagggggtgtgttaagagtct 15590151  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32908917 - 32908825
Alignment:
Q  1 atctgctatcaggtttttattctcggatcatccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtc 94  Q
    |||||||||||||||| |  | |||| ||| |||| ||||||||| ||||| |||||| |||||| ||||| || || ||| ||||||||||||    
T  32908917 atctgctatcaggtttctgctatcgggtcacccaccatttatgtcaacgaaccaaacccaatagtgctggtcgtgag-gggtgtgttaagagtc 32908825  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 11896084 - 11896008
Alignment:
Q  32 ccactatttatgtccacgaatcaaacctaatagtactggttgtaagagggggtgttaagagtctaatattggatagg 108  Q
    |||| |||||||||| |||| |||||| ||||||  |||| || || ||| ||||||||||||| | ||||||||||    
T  11896084 ccaccatttatgtccgcgaaccaaacccaatagtgatggtcgtgagggggtgtgttaagagtcttacattggatagg 11896008  T

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