View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_42 (Length: 264)
Name: NF1144_low_42
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 22450763 - 22450855
Alignment:
| Q |
34 |
gcaccggtaacaaggacagtgaaggccaagacagcactaccattactacaatagtacaatatatatctcagctaccattactataaccaaaat |
126 |
Q |
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| T |
22450763 |
gcaccggtaacaaggacagtgaaggccaagacagcactaccattactacaatagtacaatatatatctcagctaccattactataaccaaaat |
22450855 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 22453253 - 22453291
Alignment:
| Q |
136 |
ctaagggattgatattatttgtttgtacatagataatgc |
174 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
22453253 |
ctaaggaattgatattatttgtttgtacatagataatgc |
22453291 |
T |
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