View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_5 (Length: 567)
Name: NF1144_low_5
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 154 - 557
Target Start/End: Complemental strand, 25153463 - 25153059
Alignment:
| Q |
154 |
taactattttatattgtttatggagtgttctaaaggaacaa-gcacaccatatttaatttaattttcataagtctttctgttatctccatacgtgctaaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
25153463 |
taactattttatattgtttatggagtgttctaaagggacaaagcacaccatatttaaactaattttcataagtctttctgttatctccatacgtggtaaa |
25153364 |
T |
|
| Q |
253 |
taattagctataaaattataataaaaatttatgtttcttacatcaaattgagaaaagatatgactaaaattctcaagcttgtttacattatgatcttctt |
352 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25153363 |
taattagctataaaattataataaaaatctatgtttgttacatcaaattgagaaaagatatgactaaaattctcaagcttgtttacattatgatcttctt |
25153264 |
T |
|
| Q |
353 |
tgttttcttattttttcttgttagggttgtaaactctggtattccctttctctattttaatttctaaaagtttatgcactactttattcacaacctttta |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
25153263 |
tgttttcttattttttcttgttagggttgtaaactctggtattccctttctctattttaatttctcaaagtttttgccctactttattcacaacctttta |
25153164 |
T |
|
| Q |
453 |
tacattttaattaacactccttacttcttgttatacattacagattatccttatccttgttttatcgacaagaaaacttgtcaactaaattgtcctaaac |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25153163 |
tacattttaattaacactccttacttcttgttatacattacagattatccttatccttgttttgttgacaagaaaacttgtcaactaaattgtcctaaac |
25153064 |
T |
|
| Q |
553 |
ctttg |
557 |
Q |
| |
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||||| |
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|
| T |
25153063 |
ctttg |
25153059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 212 - 498
Target Start/End: Complemental strand, 25148143 - 25147859
Alignment:
| Q |
212 |
taattttcataagtctttctgttatctccatacgtgctaaa-taattagctataaaattataataaaaattt-atgtttcttacatcaaattgagaaaag |
309 |
Q |
| |
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|||||||||||||||||||| ||||||||| || |||| ||||||| |||||| |||||| || ||| |||||| |||||||||| |||||||| |
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| T |
25148143 |
taattttcataagtctttcttgtatctccat---tgataaaataattagttataaacttataaaaactgttttatgttttttacatcaaaaggagaaaag |
25148047 |
T |
|
| Q |
310 |
atatgactaaaattctcaagcttgtttacattatgatcttctttgttttcttattttttcttgttagggttgtaaactctggtattccctttctctattt |
409 |
Q |
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||||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
25148046 |
atatgactaaaatgctcaagcttgtttactttatgatcttgtttgttttcatattttttcttgttagggttgtaaactctggtaatgtctttctctattt |
25147947 |
T |
|
| Q |
410 |
taatttctaaaagtttatgcactactttattcacaaccttttatacattttaattaacactccttacttcttgttatacattacagatt |
498 |
Q |
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|||||||| | ||||| ||||||||||||| |||||| |||||| |||||| | |||||||| ||||||||||||||||| ||||||| |
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| T |
25147946 |
taatttctcagagtttttgcactactttatgcacaactttttattcattttca-taacactctttacttcttgttatacaacacagatt |
25147859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 25148287 - 25148176
Alignment:
| Q |
99 |
tgtttatcatgaatggttataagaaataaaaggtaatt---gaaggttgataaaaaa--ctaactattttatattgtttatggagtgttctaaaggaaca |
193 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||| |||||| ||| |
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| T |
25148287 |
tgtttatcatgaaaggttataagaaatagaaggtaattaatgaaggttgataaaaaaaactatttattttaaattgtttatggagtgttataaagggaca |
25148188 |
T |
|
| Q |
194 |
agcacaccatat |
205 |
Q |
| |
|
|||||| ||||| |
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|
| T |
25148187 |
agcacaacatat |
25148176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 25154179 - 25154145
Alignment:
| Q |
118 |
taagaaataaaaggtaattgaaggttgataaaaaa |
152 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
25154179 |
taagaaataaaaggtaattgaaggttgataaaaaa |
25154145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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