View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_50 (Length: 248)
Name: NF1144_low_50
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_50 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37198 - 36958
Alignment:
| Q |
1 |
caattcatgcataacagcaacagccctcttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37198 |
caattcatgcataacagcaacagccctcttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctga |
37099 |
T |
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| Q |
101 |
aacatttttatcttttcaccataataactatgcacccttttaaaatttgcaggaaattttaaaggaaatggcagagaaagcaaacccggagtatgttcgg |
200 |
Q |
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| T |
37098 |
aacatttttatcttttcaccataataactatgcacccttttaaaatttgcaggaaatttcaaaggaaatggcagagaaagcaaacccggagtatgttcgg |
36999 |
T |
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| Q |
201 |
tttcagttaccccttccacaatcatcttattcttcatctca |
241 |
Q |
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| T |
36998 |
tttcggttaccccttccataatcatcttattcttcttctca |
36958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 48662427 - 48662187
Alignment:
| Q |
1 |
caattcatgcataacagcaacagccctcttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662427 |
caattcatgcataacagcaacagccctcttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctga |
48662328 |
T |
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| Q |
101 |
aacatttttatcttttcaccataataactatgcacccttttaaaatttgcaggaaattttaaaggaaatggcagagaaagcaaacccggagtatgttcgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48662327 |
aacatttttatcttttcaccataataactatgcacccttttaaaatttgcaggaaatttcaaaggaaatggcagagaaagcaaacccggagtatgttcgg |
48662228 |
T |
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| Q |
201 |
tttcagttaccccttccacaatcatcttattcttcatctca |
241 |
Q |
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|||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
48662227 |
tttcggttaccccttccaaaatcatcttattcttcttctca |
48662187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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