View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_54 (Length: 230)
Name: NF1144_low_54
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 47851839 - 47852049
Alignment:
| Q |
1 |
taagaaatatagcgcagaagatgaaaatgatgtatgatacgactttaatttttctgaaaacttcaacattaaaaattctttcggtnnnnnnnnntcaact |
100 |
Q |
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| T |
47851839 |
taagaaatatagcgcagaagatgaaaatgatgtatgatacgactttaatttttctgaaaacttcaacattaaaaattctttcggtaaaaaaaaatcaact |
47851938 |
T |
|
| Q |
101 |
aacaataacttaatgaaagactattcatatttattatgtatatatcagaaagattggtcgtaattcagatagaaaccagaaagcaacaaaatgcagaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47851939 |
aacaataacttaatgaaagactattcatatttattatgtatatatcagaaagattggtcgtaattcagatagaaaccagaaagcaacaaaatgcagaatg |
47852038 |
T |
|
| Q |
201 |
ttgatgatgtc |
211 |
Q |
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|| |||||||| |
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| T |
47852039 |
tttatgatgtc |
47852049 |
T |
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