View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_6 (Length: 538)
Name: NF1144_low_6
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 90 - 451
Target Start/End: Original strand, 53676235 - 53676596
Alignment:
| Q |
90 |
gcaaggttgccacatagccttcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaataat |
189 |
Q |
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| T |
53676235 |
gcaaggttgccacatagccttcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaataat |
53676334 |
T |
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| Q |
190 |
attattgtccaattttaaagtttatcttttaacattttatttattttctcttcactgcgtgtttcttagcttctacaaagagggttaagtgtgacaaaca |
289 |
Q |
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| T |
53676335 |
attattgtccaattttaaagtttatcttttaacattttatttattttctcttgactgcgtgtttcttagcttctacaaagaggtttaagtgtcacaaaca |
53676434 |
T |
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| Q |
290 |
atattttaaaactaagttatttgattcattgagtctctctgatataaagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcc |
389 |
Q |
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| T |
53676435 |
atattttaaaactaagttatttgattcattgagtctctctgatatatagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcc |
53676534 |
T |
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| Q |
390 |
tattagccatgatcatgacctataaagatcgtgtcctaattgcttctattcggctaacctta |
451 |
Q |
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| T |
53676535 |
tattagccatgatcatgacatataaagatcgtgtcctaattgctattattcggctaacctta |
53676596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 53676622 - 53676676
Alignment:
| Q |
452 |
gttattttttatagtgttggtctttatgtgtcttgttctattactcatttcaagc |
506 |
Q |
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| T |
53676622 |
gttattttgtatagtattggtctttatgtgtcttgttctattactcatttcaagc |
53676676 |
T |
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