View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_7 (Length: 502)
Name: NF1144_low_7
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_7 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 94 - 490
Target Start/End: Complemental strand, 48662800 - 48662404
Alignment:
| Q |
94 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662800 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
48662701 |
T |
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| Q |
194 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662700 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
48662601 |
T |
|
| Q |
294 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacataaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662600 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacgtaaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
48662501 |
T |
|
| Q |
394 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662500 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagc |
48662404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 94 - 490
Target Start/End: Complemental strand, 37571 - 37175
Alignment:
| Q |
94 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37571 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctcctcatctgaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
37472 |
T |
|
| Q |
194 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37471 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
37372 |
T |
|
| Q |
294 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacataaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37371 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacttaaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
37272 |
T |
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| Q |
394 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37271 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagc |
37175 |
T |
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