View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1144_low_8 (Length: 497)
Name: NF1144_low_8
Description: NF1144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1144_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 42815711 - 42815534
Alignment:
| Q |
78 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
177 |
Q |
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| T |
42815711 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
42815612 |
T |
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| Q |
178 |
ttcttatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattcgatcgtaacctagatag |
255 |
Q |
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| T |
42815611 |
ttcttatcgttcttgaagaattttagatttattttaatcgttctggtggttcgatttattcgatcgtaacctagatag |
42815534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 35064677 - 35064503
Alignment:
| Q |
82 |
ctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgtttct |
181 |
Q |
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| T |
35064677 |
ctgttgcttctcgtggtttctaattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctctcaagatcattcaagactccgtttct |
35064578 |
T |
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| Q |
182 |
tatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattcgatcgtaacctagatagg |
256 |
Q |
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| T |
35064577 |
tatcgttcttgaagaaatttagatttattttcattgttatggtggttcgatttattcgatcgtgacctagatagg |
35064503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 43025870 - 43025726
Alignment:
| Q |
78 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
177 |
Q |
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| T |
43025870 |
gttgctgttgctttacgcggtttcttgttcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
43025771 |
T |
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| Q |
178 |
tt----cttatcgttcttgaagaattttagatttattttcattgt |
218 |
Q |
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| T |
43025770 |
ttcttacttatcgttcttgaagagttttagatttattttcattgt |
43025726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 35064371 - 35064278
Alignment:
| Q |
393 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
486 |
Q |
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| T |
35064371 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
35064278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 394 - 486
Target Start/End: Complemental strand, 42815411 - 42815319
Alignment:
| Q |
394 |
tgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
486 |
Q |
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| T |
42815411 |
tgttaattcaatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
42815319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 483
Target Start/End: Complemental strand, 43025627 - 43025537
Alignment:
| Q |
393 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtccttt |
483 |
Q |
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| T |
43025627 |
gtgttaattgaatagagtaatttacaatggcggtgtattataaatttaagagtgcaaaagattaccattcaattccaatggatggtccttt |
43025537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 41562472 - 41562546
Alignment:
| Q |
415 |
taccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatctc |
489 |
Q |
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| T |
41562472 |
taccatggcggtgtattataaatttaaaagtgcaagagattatgattcaatttccatggatggtcctttcatctc |
41562546 |
T |
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