View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11450_high_1 (Length: 818)
Name: NF11450_high_1
Description: NF11450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11450_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 39243803 - 39244300
Alignment:
| Q |
11 |
cacagataccacaagatcaaccatgagtgacctgtcgttgaaaaaataaacattgagtgaactcaaaacgtgattaattaaaaatagttgacaagggaaa |
110 |
Q |
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| T |
39243803 |
cacagataccacaagatcaaccatgagtgacctgtcgttgaaaaaataaacattgagcgacctcaaa-cgtgattaattaaaaatagttgacaaggaaaa |
39243901 |
T |
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| Q |
111 |
agtaatgtaatttaaactgtgtagggatccaacatcaaaagttaacnnnnnnnngaa----gtacatacaaagttaatttattatttctagaggtgatac |
206 |
Q |
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| T |
39243902 |
agtaatgtaatttaaactgtgtagggatccaacatcaaaagttaacaaaaaaaaaaaaggagtacatacaaagttaatttattatttctagaggtgatac |
39244001 |
T |
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| Q |
207 |
gagaggtcactaccaccaattgtgttttgtgcattggaatgttcgttagctgtgtgttatggacaaaactttaacacataaattggcagtttgcaaagat |
306 |
Q |
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| T |
39244002 |
gagaggtcactaccaccaattgtgttttgtgcattggaatgttcgttagctgtgtgttatggacaaaactttaacacataaattggcagtttgcaaagat |
39244101 |
T |
|
| Q |
307 |
tttatggatataattgtcaaatagaaattcagactatatggacaaatgatcgggaaagatatagggtgatacgttacattgatcttacaagatggattcg |
406 |
Q |
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| T |
39244102 |
tttatggatataattgtcaaatagaaattcagactatatggacaaatgatcgggaaagatatagggtgatacgttacattgatcttacaagatggattcg |
39244201 |
T |
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| Q |
407 |
aaaatgagattgaaaagggtcaaacatataaaagaagaaagcaaaggttgataaatcatcaaagacacttatataatttgttgaggagaagatagtcgg |
505 |
Q |
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| T |
39244202 |
aaaatgagattgaaaagggtcaaacatataaaagaagaaagcgaaggttgataaatcatcaaagacacttatataatttgttgaggagaagatagtcgg |
39244300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 587 - 800
Target Start/End: Original strand, 39244374 - 39244587
Alignment:
| Q |
587 |
agacaacattagtaatgtcgacaaaacaacaccaacatttcacaatttaccttcaagtgtctaataatctagtcattcacttttaaacacactccttcga |
686 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39244374 |
agacaacattagtaatgtcgacaaaacaacaccaacatttcacaatttaccttcaagtgtctaataatctagtcattcacttttaaacacactccctcga |
39244473 |
T |
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| Q |
687 |
agcgcaagcccaaacgacagtgtcaannnnnnnaggcgttcattggtttacaaaagtaggtacctcaaggacacatctttaaaggtgatcccccattcaa |
786 |
Q |
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| T |
39244474 |
agcgcaagcccagacgacagtgtcaatttttttaggcgttcaccggtttacaaaagtaggtacctcaaggacacatctttaaaggtgatccctcattcaa |
39244573 |
T |
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| Q |
787 |
tggcggagccacgt |
800 |
Q |
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| T |
39244574 |
tggcggagccacgt |
39244587 |
T |
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