View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11450_low_3 (Length: 461)

Name: NF11450_low_3
Description: NF11450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11450_low_3
NF11450_low_3
[»] chr5 (1 HSPs)
chr5 (18-454)||(1439467-1439903)
[»] chr6 (16 HSPs)
chr6 (18-350)||(28090882-28091217)
chr6 (18-345)||(28001508-28001832)
chr6 (168-346)||(28047066-28047244)
chr6 (168-346)||(28034860-28035038)
chr6 (168-346)||(27916502-27916680)
chr6 (168-346)||(28074241-28074419)
chr6 (31-121)||(27917394-27917483)
chr6 (200-334)||(28017118-28017252)
chr6 (21-70)||(28074465-28074514)
chr6 (19-70)||(28035085-28035136)
chr6 (25-70)||(28017330-28017375)
chr6 (18-70)||(27916726-27916777)
chr6 (248-338)||(28533667-28533757)
chr6 (47-92)||(28018064-28018109)
chr6 (421-454)||(28090791-28090824)
chr6 (31-82)||(28035793-28035845)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 1439903 - 1439467
Alignment:
Q  18 catggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattcttcatgaaagataatgcagttgaatcataaaaggatgaagacatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1439903 catggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattcttcatgaaagataatgcagttgaatcataaaaggatgaagacatgt 1439804  T
Q  118 tgaagcatcaacacagacaacacggaaatggaaggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaaaga 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1439803 tgaagcatcgacacagacaacacggaaatggaaggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcgaaaaga 1439704  T
Q  218 gtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1439703 gtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagct 1439604  T
Q  318 ttacttttttaccttctgcaagagaaaccacattggttaaaagtgttgtttctcacnnnnnnnnatcaaggttgcgttgctgattattgctagttcttta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  1439603 ttacttttttaccttctgcaagagaaaccacattggttaaaagtgttgtttctcacttttttttatcaaggttgcgttgctgattattgctagttcttta 1439504  T
Q  418 tgctatcattatatcaagtatagttgtacctttgctt 454  Q
    |||||||||||||||||||||||||||||||||||||    
T  1439503 tgctatcattatatcaagtatagttgtacctttgctt 1439467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 28091217 - 28090882
Alignment:
Q  18 catggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattcttcatgaaagataatgcagttgaatcataaaaggatgaagacatgt 117  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||| |    
T  28091217 catggagatatatatgctatgtaaagaagttatagaaaaaatgaaacaacattctacatgaaagataatgcaattgaatcgtaaaagggtgaagacatat 28091118  T
Q  118 tgaagcatcaa--cacagacaacacggaaatggaa-ggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaa 214  Q
    ||||| ||| |  || ||| |||| ||||| |||| |||| ||||||||||  |||||||||||||||||||||||||||||||||| |||||||| ||     
T  28091117 tgaagtatcgatgcaaagagaacaaggaaaaggaatggatcaataaataaatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaag 28091018  T
Q  215 agagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaa 314  Q
    ||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||    
T  28091017 agagttgtgacttcttcaatgtctttagcacgaagtgaaaatgcctccacattggttaagcatcttactgttctgtcgctagtcaaaccctggccgtgaa 28090918  T
Q  315 gctttacttttttaccttctgcaagagaaaccacat 350  Q
    |||||| |||||||||||||||||||||||||||||    
T  28090917 gctttatttttttaccttctgcaagagaaaccacat 28090882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 28001832 - 28001508
Alignment:
Q  18 catggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattcttcatgaaagataatgcagttgaatcataaaaggatgaagacatgt 117  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| |||  || |||||||||||| ||||||||||     
T  28001832 catggagatacatatgcaaggtagagaagttatagaaaaaatgaaacaatatttttcatcaaagatagtgctttt-aatcataaaagggtgaagacatgc 28001734  T
Q  118 tgaagcatcaacaca--gacaacacggaaatggaaggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaaa 215  Q
    ||||  |||| || |  || ||||  ||||||||||||   |||||| ||  ||||||| |||||||||    |||||||||||||||||| ||||||||    
T  28001733 tgaat-atcaccagaaagagaacaatgaaatggaagga---ataaattaatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaa 28001638  T
Q  216 gagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaag 315  Q
    |||| |  | |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||  |||||| || ||   |||||||||    
T  28001637 gagttgcgagttcttcaatgtctttaacgcggagtgaaaatgcctccacattggttaagcattttactgatctggtactagttaagccccatccttgaag 28001538  T
Q  316 ctttacttttttaccttctgcaagagaaac 345  Q
    ||||||||||||||||||| | ||||||||    
T  28001537 ctttacttttttaccttctacgagagaaac 28001508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 168 - 346
Target Start/End: Complemental strand, 28047244 - 28047066
Alignment:
Q  168 accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt 267  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||  |||||||||||||||||||||    
T  28047244 accttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacatt 28047145  T
Q  268 ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc 346  Q
    |||||||||| |||| |||||||||||||| || || |||||||||| |||||| ||||||| |||| |||||||||||    
T  28047144 ggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaacc 28047066  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 168 - 346
Target Start/End: Complemental strand, 28035038 - 28034860
Alignment:
Q  168 accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt 267  Q
    ||||||| |||  ||||||  ||||||||||||||||||||| ||| ||||| || ||||| |||||||||||||||  ||||||||||||||| |||||    
T  28035038 accttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcctccacatt 28034939  T
Q  268 ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc 346  Q
    |||||||||| ||||||||||||||||||| || || |||||| ||| ||||||||||||||| ||| |||||||||||    
T  28034938 ggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttacttttttaccgtctacaagagaaacc 28034860  T

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Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 168 - 346
Target Start/End: Complemental strand, 27916680 - 27916502
Alignment:
Q  168 accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt 267  Q
    ||||||| |||  ||||||| ||||||||||||||| | ||| ||||||||| || ||||||||||||||||||||   ||||||||||||||| |||||    
T  27916680 accttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgacttcttcaatgtctttagcttcgagtgaaaatgcctccacatt 27916581  T
Q  268 ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc 346  Q
    |||||||||  ||||||||||||||||| | ||  | |||||||||| ||||||||||||||||||| |||||||||||    
T  27916580 ggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttaccttctacaagagaaacc 27916502  T

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Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 346
Target Start/End: Complemental strand, 28074419 - 28074241
Alignment:
Q  168 accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt 267  Q
    ||||||| |||  |||||| ||||||||| |||||||||||| |||| |||| || |||||||||||||||||||||  ||||||||||||||| | |||    
T  28074419 accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaatt 28074320  T
Q  268 ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc 346  Q
    |||||||||||||||||||||||||||| | ||  | ||| |||||| ||||||||  ||||||||| |||||||||||    
T  28074319 ggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaacc 28074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 27917483 - 27917394
Alignment:
Q  31 atgcaatgtagagaagttatagaaaaaatgaaacaacattcttcatgaaagataatgcagttgaatcataaaaggatgaagacatgttgaa 121  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||    
T  27917483 atgcaatgtagaaaagttatagaaaaaatgaaacaacattcttcatgaaagaaaatgcagtt-aatcataaaagggtgaagacatgctgaa 27917394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 28017252 - 28017118
Alignment:
Q  200 aagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtca 299  Q
    |||| |||||||||| |||| || |||||||||||  ||||||||  |||| |||||||||| |||| |||||||||| ||||||||||||||||||| |    
T  28017252 aagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagcattttactgttctgtcactagtta 28017153  T
Q  300 atccttgtccttgaagctttacttttttaccttct 334  Q
    | || |||||||||| |||||||| ||||||||||    
T  28017152 agccatgtccttgaatctttacttctttaccttct 28017118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 28074514 - 28074465
Alignment:
Q  21 ggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074514 ggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 28074465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 28035136 - 28035085
Alignment:
Q  19 atggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 70  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28035136 atggagatatatatgcaatgtagagaagttatagaacaaatgaaacaacatt 28035085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 28017375 - 28017330
Alignment:
Q  25 atatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 70  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  28017375 atatatatgcaatatagagaagttatagaaaaaatgaaacaacatt 28017330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 27916777 - 27916726
Alignment:
Q  18 catggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 70  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  27916777 catggagatatatatgcaatatagagaagtaatag-aaaaatgaaacaacatt 27916726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 28533757 - 28533667
Alignment:
Q  248 agtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaa 338  Q
    |||||||||||||| ||||| ||||||||  ||||||| ||||  ||| | ||||  |||||| ||||| ||||||||||||| |||||||    
T  28533757 agtgaaaatgcctccacatttgttaagcactttactgtcctgttgctaattaatctctgtcctggaagccttacttttttaccatctgcaa 28533667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 28018109 - 28018064
Alignment:
Q  47 ttatagaaaaaatgaaacaacattcttcatgaaagataatgcagtt 92  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||    
T  28018109 ttatagaaaaaattaaacaacattcttcaagaaatataatgcagtt 28018064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 28090824 - 28090791
Alignment:
Q  421 tatcattatatcaagtatagttgtacctttgctt 454  Q
    ||||||||||||||||||||||||||||||||||    
T  28090824 tatcattatatcaagtatagttgtacctttgctt 28090791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 28035845 - 28035793
Alignment:
Q  31 atgcaatgtagagaagttatagaaaaaa-tgaaacaacattcttcatgaaaga 82  Q
    |||| ||||||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  28035845 atgctatgtagaaaagttatagaaaaaaatgaaaaaacatgcttcatgaaaga 28035793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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