View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11451_high_5 (Length: 345)
Name: NF11451_high_5
Description: NF11451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11451_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 47117120 - 47116780
Alignment:
| Q |
1 |
caccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcg |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47117120 |
caccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcg |
47117021 |
T |
|
| Q |
101 |
ttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47117020 |
ttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaa |
47116925 |
T |
|
| Q |
201 |
actaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116924 |
actaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaa |
47116825 |
T |
|
| Q |
301 |
gagatatcataaggaaatgaaataacaagggtatgaggaagcttg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116824 |
gagatatcataaggaaatgaaataacaagggtatgaggaagcttg |
47116780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University