View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11451_low_2 (Length: 374)

Name: NF11451_low_2
Description: NF11451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11451_low_2
NF11451_low_2
[»] chr2 (2 HSPs)
chr2 (2-338)||(23379264-23379600)
chr2 (68-200)||(44885752-44885884)
[»] chr4 (1 HSPs)
chr4 (277-358)||(16582731-16582812)
[»] chr3 (9 HSPs)
chr3 (3-361)||(16739820-16740178)
chr3 (68-196)||(49642078-49642206)
chr3 (57-120)||(31661604-31661667)
chr3 (57-120)||(31808608-31808671)
chr3 (57-120)||(31934686-31934749)
chr3 (57-120)||(31972944-31973007)
chr3 (57-120)||(38015693-38015756)
chr3 (68-177)||(19771126-19771235)
chr3 (290-327)||(8565693-8565730)
[»] chr7 (6 HSPs)
chr7 (8-174)||(13015539-13015705)
chr7 (68-200)||(17239223-17239355)
chr7 (1-135)||(15630638-15630772)
chr7 (57-120)||(41600880-41600943)
chr7 (272-361)||(13015353-13015442)
chr7 (288-361)||(15632907-15632980)
[»] chr5 (2 HSPs)
chr5 (57-119)||(16084517-16084579)
chr5 (8-135)||(2158393-2158520)
[»] chr1 (5 HSPs)
chr1 (68-200)||(24082833-24082965)
chr1 (71-199)||(40490565-40490693)
chr1 (57-120)||(21703397-21703460)
chr1 (299-361)||(41116877-41116939)
chr1 (68-168)||(41340358-41340458)
[»] scaffold0252 (1 HSPs)
scaffold0252 (57-110)||(7365-7418)
[»] chr8 (5 HSPs)
chr8 (77-120)||(27978209-27978252)
chr8 (77-120)||(28035478-28035521)
chr8 (290-327)||(35284713-35284750)
chr8 (20-200)||(14658242-14658422)
chr8 (57-117)||(35284480-35284540)
[»] scaffold0011 (1 HSPs)
scaffold0011 (68-200)||(191555-191687)
[»] chr6 (2 HSPs)
chr6 (57-120)||(9958673-9958736)
chr6 (68-200)||(30588447-30588579)
[»] scaffold0414 (1 HSPs)
scaffold0414 (61-110)||(9879-9928)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 338
Target Start/End: Original strand, 23379264 - 23379600
Alignment:
Q  2 gctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagttt 101  Q
    ||||||||||||||| | |||||||| ||||||| ||| |||| |||| |    |||||||| || |||||||||||||||||| |||| |||  ||| |    
T  23379264 gctgccattttttctttgcttgaaaatttgtcggttgaactttcacaatgtttaacaactgtaatttggagcatttggaaacactgcaaccttcaagtat 23379363  T
Q  102 gggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggttcttgcatcaaa 201  Q
    ||||||||||||||||||||||||||||    || ||| ||||| ||||||||||| |||||||||||||||||||||||||||| || | ||||||||     
T  23379364 gggaagatgtcacagaaaccagcgctacaacagttgaacgagcccggaatatggttcttgattggcagctagctaacactcccgaagtgcctgcatcaac 23379463  T
Q  202 tagtcaacaccaaccgtaattatcaattgaggggggaccttccacttcggctcccctaaatgtccgagcgtggcagcctcctatgccgggtagatataaa 301  Q
    ||||||| |||| |||  | | ||| |||||||||||||| ||||||||| | | |  |||||| ||  |||| |||||||| |||||||||||||||||    
T  23379464 tagtcaaaaccagccgacactgtcacttgaggggggacctaccacttcggtttcacccaatgtctgaaagtggtagcctcctctgccgggtagatataaa 23379563  T
Q  302 tgcaatattgacaccgcgttctcatcctccctcaacc 338  Q
    || || |||||| | || ||||| |||||||||||||    
T  23379564 tgtaacattgacgctgctttctcctcctccctcaacc 23379600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 44885752 - 44885884
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||| ||||    
T  44885752 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgactggc 44885851  T
Q  168 agctagctaacactcccgaggttcttgcatcaa 200  Q
    || | ||||| ||||| | ||||||||||||||    
T  44885852 agttggctaatactcctgcggttcttgcatcaa 44885884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 16582812 - 16582731
Alignment:
Q  277 gcctcctatgccgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgt 358  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  16582812 gcctcctatgccaggtagatataaatgcaatattgacgccgcgttctcatcctccctcaatcgaactggtattgaaatttgt 16582731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 16740178 - 16739820
Alignment:
Q  3 ctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagtttg 102  Q
    |||| ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || ||||||||||||||||||||||||||| | || ||    
T  16740178 ctgcaattttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccgcaatcttcgcgtctg 16740079  T
Q  103 ggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggttcttgcatcaaat 202  Q
    ||| |||||  ||||||  |||||||||||||| ||  ||||| | |  |||||| ||||||||||| |||| ||   ||| | ||  || ||||| ||     
T  16740078 ggacgatgtttcagaaatgagcgctacggtggttgaccgagcccgaagcatggttgttgattggcagttagccaatgatccagcggccctagcatctaac 16739979  T
Q  203 agtcaacaccaaccgtaattatcaattgaggggggaccttccacttcggctcccctaaatgtccgagcgtggcagcctcctatgccgggtagatataaat 302  Q
    |||||||||||| ||  | || |  ||||||||||||| ||||||||||  |||| || |   |   | ||||  |||||| | |||||| |||||||||    
T  16739978 agtcaacaccaatcgccaataccctttgaggggggaccgtccacttcggggccccaaattacacattcttggcgacctcctcttccgggtcgatataaat 16739879  T
Q  303 gcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 361  Q
    |||| |||||    |||||||| |||||||||||||  ||||||||||| |||||||||    
T  16739878 gcaacattgatgttgcgttctcttcctccctcaaccacactggtattgatatttgtgtc 16739820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 49642078 - 49642206
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||||||||    
T  49642078 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggc 49642177  T
Q  168 agctagctaacactcccgaggttcttgca 196  Q
    | || ||||| ||||  | ||||||||||    
T  49642178 aactggctaatactcttgcggttcttgca 49642206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 31661667 - 31661604
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31661667 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 31808608 - 31808671
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    |||||||||| |||||| | ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  31808608 caactgtcatttggagcttatggaaacaccgtaatcttagagtttgggacgatgttacagaaac 31808671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 31934686 - 31934749
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31934686 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 31972944 - 31973007
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31972944 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31973007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 38015756 - 38015693
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38015756 caactgtaatatggagtattttgaaacaccgcaatcttagagtttgggaagatgtaatagaaac 38015693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 19771235 - 19771126
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||| ||||||||||||| |||||||||||||| || ||||  |  ||| | || |||||||| || ||||| || |||||| ||||| |||||||||    
T  19771235 tggagcctttggaaacaccgtaatcttagagtttgagatgatgctatggaagctagtgctacggttgttgaatgtgctaggaatttggttgttgattggc 19771136  T
Q  168 agctagctaa 177  Q
    | || |||||    
T  19771135 aactggctaa 19771126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 8565693 - 8565730
Alignment:
Q  290 ggtagatataaatgcaatattgacaccgcgttctcatc 327  Q
    |||||||||||||||||||||||| | |||||||||||    
T  8565693 ggtagatataaatgcaatattgacgcagcgttctcatc 8565730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 13015705 - 13015539
Alignment:
Q  8 attttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaag 107  Q
    ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || ||||||||||||||||||| ||||||| | || ||||| |    
T  13015705 attttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccacaatcttcgcgtctgggatg 13015606  T
Q  108 atgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagc 174  Q
    ||||  ||||||| ||||||| |||||| ||  ||||| | |  |||||| ||||||||||| ||||    
T  13015605 atgtttcagaaacaagcgctatggtggttgaccgagcccgaagcatggttgttgattggcagttagc 13015539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 17239355 - 17239223
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||||||||    
T  17239355 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggc 17239256  T
Q  168 agctagctaacactcccgaggttcttgcatcaa 200  Q
    | || ||||| ||||  | ||||||||||||||    
T  17239255 aactggctaatactcatgcggttcttgcatcaa 17239223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 15630638 - 15630772
Alignment:
Q  1 agctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagtt 100  Q
    |||||| ||||||||| | || |||| ||||| |  ||| |||| |||||||| |||||| || || ||||||||||||||||||||| ||||| |  |     
T  15630638 agctgcaattttttctttgctcgaaaccttgttgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccgcgatcttcgcatc 15630737  T
Q  101 tgggaagatgtcacagaaaccagcgctacggtggt 135  Q
    ||||| |||||  ||||||| ||||||||||||||    
T  15630738 tgggacgatgtttcagaaacgagcgctacggtggt 15630772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 41600880 - 41600943
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||| ||| ||||    
T  41600880 caactgtcatgtggagcttatggaaacactgcaatcttagagtttgggacgatgttacaaaaac 41600943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 13015442 - 13015353
Alignment:
Q  272 tggcagcctcctatgccgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 361  Q
    ||||| |||||| | |||||| ||||||||||||| |||||    |||||||| |||||||||||||| ||||||||||  |||||||||    
T  13015442 tggcaacctcctcttccgggtcgatataaatgcaacattgatgttgcgttctcttcctccctcaaccgcactggtattggtatttgtgtc 13015353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 15632907 - 15632980
Alignment:
Q  288 cgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 361  Q
    ||||| ||||||||||||| |||||  | |||||||| |||||||||||||  ||||||||||  |||||||||    
T  15632907 cgggtcgatataaatgcaacattgatgctgcgttctcttcctccctcaaccacactggtattggtatttgtgtc 15632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 16084517 - 16084579
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaa 119  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||    
T  16084517 caactgtcatgtggagcttatggaaacaccgcaatcttagagtttgggacgatgttacagaaa 16084579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 2158520 - 2158393
Alignment:
Q  8 attttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaag 107  Q
    ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || |||||||||||||||||||| |||||| | || |||||      
T  2158520 attttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccggaatcttcgcgtctgggaca 2158421  T
Q  108 atgtcacagaaaccagcgctacggtggt 135  Q
    ||||  || |||| ||||||||||||||    
T  2158420 atgtttcaaaaacgagcgctacggtggt 2158393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 24082833 - 24082965
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||| ||||||||||||  || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||| |||||||||    
T  24082833 tggagcctttggaaacaccagaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggttgttgattggc 24082932  T
Q  168 agctagctaacactcccgaggttcttgcatcaa 200  Q
    | || ||||| |||||   ||||||||||||||    
T  24082933 aactggctaatactcctacggttcttgcatcaa 24082965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 40490693 - 40490565
Alignment:
Q  71 agcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagc 170  Q
    ||||||||||||||||| || |||||||||||||| ||||| |  |||||||| |||  ||| ||||| || || ||||| |||||  ||||||| ||      
T  40490693 agcatttggaaacaccgtaaccttagagtttgggatgatgttatggaaaccagtgcttaggttgtggagtgtgctaggaaaatggtcgttgattgacatt 40490594  T
Q  171 tagctaacactcccgaggttcttgcatca 199  Q
    | |||||||||||||  | ||||||||||    
T  40490593 tggctaacactcccgtcgctcttgcatca 40490565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 21703460 - 21703397
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||    |||||||||||||||||||||||||| || ||||| ||||||||    
T  21703460 caactgtcatgtggagttgatggaaacaccgcaatcttagagtttgtgacgatgttacagaaac 21703397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 41116877 - 41116939
Alignment:
Q  299 aaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 361  Q
    |||||||| |||||  |||||||||| |||||||||||||| ||||||||||  |||||||||    
T  41116877 aaatgcaacattgatgccgcgttctcttcctccctcaaccgcactggtattggtatttgtgtc 41116939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 41340358 - 41340458
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||| ||||||| ||||| |||||||||||||| || | ||| |||||| | || |||||||| || ||| | || |||||| || || |||||||||    
T  41340358 tggagcctttggaagcaccgtaatcttagagtttgagatgttgttacagaagcaagtgctacggttgttgaacgtgctaggaatctgtttgttgattggc 41340457  T
Q  168 a 168  Q
    |    
T  41340458 a 41340458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 7365 - 7418
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatg 110  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||| ||||    
T  7365 caactgtcatgtggagcttatggaaacaccacaatcttagagtttgggacgatg 7418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 27978209 - 27978252
Alignment:
Q  77 tggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  27978209 tggaaacaccgcaatcttagagtttgggaagatgttacaaaaac 27978252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 28035478 - 28035521
Alignment:
Q  77 tggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  28035478 tggaaacaccgcaatcttagagtttgggaagatgttacaaaaac 28035521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 35284713 - 35284750
Alignment:
Q  290 ggtagatataaatgcaatattgacaccgcgttctcatc 327  Q
    |||||||||||||||||||||||| | |||||||||||    
T  35284713 ggtagatataaatgcaatattgacgcagcgttctcatc 35284750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 14658422 - 14658242
Alignment:
Q  20 cttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaa 119  Q
    |||||||| || || | |||||||  |||||||  || |||||| || ||||| || |||||||| || |||||||  |||| ||| ||||| | | |||    
T  14658422 cttgaaaatttatctgttgatcttgcacaacgattgataactgtgatttggagtatctggaaacatcgtaatcttaaggttttggatgatgtaataaaaa 14658323  T
Q  120 ccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggttcttgcatcaa 200  Q
    | || ||||| |||| |||| |||| ||||| |||||  | ||||||||| | |||||||| |||   |||||||||||||    
T  14658322 ctagtgctacagtggaggaacgagctaggaacatggtcgtagattggcagttggctaacacccccacagttcttgcatcaa 14658242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 35284480 - 35284540
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacaga 117  Q
    |||| ||||| |||||  ||||||||||||| |||||| | |||||||||||||| |||||    
T  35284480 caacggtcatatggagtctttggaaacaccgtaatcttcgtgtttgggaagatgttacaga 35284540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 191687 - 191555
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||||||||||||||| | || || |||||||| ||  |||||| |||||| ||  | ||||| |||||  | || || ||||||||  ||||||| |    
T  191687 tggagcatttggaaacacaggaacctcagagtttgcgataatgtcatagaaactagtacaacggtagtggagcgtgctagaaatatggtcgttgattgtc 191588  T
Q  168 agctagctaacactcccgaggttcttgcatcaa 200  Q
    | |||||||| ||||| | ||||||||||||||    
T  191587 aactagctaatactcctgtggttcttgcatcaa 191555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 9958673 - 9958736
Alignment:
Q  57 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 120  Q
    |||||||||| |||||| | ||||||||| | ||||||||||||| ||| ||||| ||||||||    
T  9958673 caactgtcatatggagcttatggaaacactgtaatcttagagtttaggacgatgttacagaaac 9958736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 30588447 - 30588579
Alignment:
Q  68 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 167  Q
    |||||||||||||||||||  || || |||||||||||  |||||| |||||| || || || || ||||| || || || ||||||||  |||||||      
T  30588447 tggagcatttggaaacaccaaaacctcagagtttgggataatgtcatagaaactagtgcaacagtagtggagtgtgctagaaatatggtcgttgattgaa 30588546  T
Q  168 agctagctaacactcccgaggttcttgcatcaa 200  Q
    | || ||||| ||||  | ||||||||||||||    
T  30588547 aactggctaatactcatgtggttcttgcatcaa 30588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 9928 - 9879
Alignment:
Q  61 tgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatg 110  Q
    ||||||||||||| | ||||||||||| |||||| |||||||||| ||||    
T  9928 tgtcatgtggagcttatggaaacaccgaaatcttcgagtttgggacgatg 9879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University