View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11452_low_11 (Length: 238)
Name: NF11452_low_11
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 496653 - 496433
Alignment:
| Q |
3 |
ttgataatatgacatctcttacgactctggatctttgcggctgctggaactttacgactctgcccctgccaagcactgtcgattctccttctcctctgga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
496653 |
ttgataatatgacatctcttacgactctggatctttgcgagtgctggaactttacgactctgcccctgccaaccaccgtcaattctccttctcctctgga |
496554 |
T |
|
| Q |
103 |
atcattgatttttctggacttaagcgtttgccatatttctgcagtacctgattctataggagaattaaaaggtttagaaaggctaaatccacagggaaat |
202 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| ||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
496553 |
gtcattgatttttctagacttgagcttttgcaatatttcggtattacctgattctataggaaaattaaagagtttagaaaggctaaatctacagggaaat |
496454 |
T |
|
| Q |
203 |
cactttactacacttccttct |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
496453 |
cactttactacacttccttct |
496433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 25488502 - 25488622
Alignment:
| Q |
102 |
aatcattgatttttctggacttaagcgtttgccatatttctgcagtacctgattctataggagaattaaaaggtttagaaaggctaaatccacagggaaa |
201 |
Q |
| |
|
|||| ||||||| | ||||||||||| ||||| |||||||| |||||| ||| | || ||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
25488502 |
aatctttgatttatttggacttaagcttttgcaatatttctaaagtaccagatgcgattggagaattaaagagtttagaaagactaaatctacagggaaa |
25488601 |
T |
|
| Q |
202 |
tcactttactacacttccttc |
222 |
Q |
| |
|
| | |||||| || ||||||| |
|
|
| T |
25488602 |
taaatttacttcagttccttc |
25488622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 25432810 - 25432674
Alignment:
| Q |
86 |
tctccttctcctctggaatcattgatttttctggacttaagcgtttgccatatttctgcagtacctgattctataggagaattaaaaggtttagaaaggc |
185 |
Q |
| |
|
|||||||||||||| |||| ||||||| | ||||||| ||| ||||| | |||| || || |||| | || |||||||||| |||||||||| | |
|
|
| T |
25432810 |
tctccttctcctctacaatctttgatttatttggacttgagcttttgcaacatttatgaagaacctaaagtgattggagaattaaggtgtttagaaagac |
25432711 |
T |
|
| Q |
186 |
taaatccacagggaaatcactttactacacttccttc |
222 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
25432710 |
taaatcttcagggaaataacttcactacacttccttc |
25432674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University