View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11452_low_2 (Length: 468)
Name: NF11452_low_2
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 468
Target Start/End: Complemental strand, 43340248 - 43339786
Alignment:
| Q |
12 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
111 |
Q |
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| T |
43340248 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
43340149 |
T |
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| Q |
112 |
ttcaatccctccct----acacataaaccaagaccaagataggcttctgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataaca |
207 |
Q |
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| T |
43340148 |
ttcaatccctccctccctacacataaaccaagaccaagataggctcttgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataaca |
43340049 |
T |
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| Q |
208 |
ttatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgatacnnnnnnnacttttcttacctttgcaaattggattgaattaatga |
307 |
Q |
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| T |
43340048 |
ttatttcgctccaaccacatgcaccaagccgttgttaaccacactaaatgcgatactttttttacttttcttacctttgcaaattggattgaattaatga |
43339949 |
T |
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| Q |
308 |
aagttgtttactacatcaccatctcaaaccttcagcccccactcccaaccaattaaaaatcaagctctacgcttccaacatctctgagcaaattgcaaac |
407 |
Q |
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| T |
43339948 |
aagttgtttactacatcaccatcccaaaccttcagcccccactcccaaccaattaaaaatcaagctccacgcttccaacgtctctgagcaagttgcaaac |
43339849 |
T |
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| Q |
408 |
aaatggctagatgtttcaatttctctaaagcagcaca--cacaacattgtcggtgaacatctc |
468 |
Q |
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| T |
43339848 |
aaatggctagatgtttcaatttctctaaagcagcacacacacaacattgtcggtgaacatctc |
43339786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 63 - 453
Target Start/End: Original strand, 1014699 - 1015088
Alignment:
| Q |
63 |
gatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccctccctacacataaaccaagaccaagataggcttctgatatgg |
162 |
Q |
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| T |
1014699 |
gatacaaacaagtggattcaaccaccaataggatcatcgaaagttcgtgttgaacccctccctacacataaaccaagaccaagataggtgtttgatagga |
1014798 |
T |
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| Q |
163 |
tcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgata |
262 |
Q |
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| T |
1014799 |
tcaaccacctctaaacaattcacaacctaccatttaaaaagaacattataacgctccaaccaaatacaccaagctgttgttagccacactaaatgcgata |
1014898 |
T |
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| Q |
263 |
cnnnnnnnacttttcttacctttgcaaattggattgaattaatgaaagttgtttactacatcaccatctcaaaccttcagcccccactcccaaccaatta |
362 |
Q |
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| T |
1014899 |
ctttttttacctttcttaccctcgcaaattgaattgaataaaaggaagttgtttgctacataacaatc-ccaaccttcagcctccactcccaatcaatta |
1014997 |
T |
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| Q |
363 |
aaaatcaagctctacgcttccaacatctctgagcaaattgcaaacaaatggctagatgtttcaatttctctaaagcagcacacacaacatt |
453 |
Q |
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| T |
1014998 |
caaatcaagctccatacatccgacgtctttgagcaagatgcaaacaaagggccagatgtttcaatttctctaaagcaccacacacaacatt |
1015088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 8726691 - 8726591
Alignment:
| Q |
163 |
tcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgata |
262 |
Q |
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| T |
8726691 |
tcaaccacctccaagcaattggccaccttcctgttaaaaagaatgttgtttcgtcccaaccaaatgcatgaagccgttatcaaccacactaaatgtgata |
8726592 |
T |
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| Q |
263 |
c |
263 |
Q |
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| T |
8726591 |
c |
8726591 |
T |
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