View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11452_low_3 (Length: 423)
Name: NF11452_low_3
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 22 - 406
Target Start/End: Complemental strand, 43698638 - 43698254
Alignment:
| Q |
22 |
aagcacttattaaatatggacttaattaagttgcttatctaaatgttttggcatgagatattgttttactgtcttaccactgaaatgcttatggttatgg |
121 |
Q |
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| T |
43698638 |
aagcacttaataaataaggacttaattaagttgcttatctaaatgttttggcatgagatattgttttactttcttaccactgaaatgcttatggttatgg |
43698539 |
T |
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| Q |
122 |
ttatactatatagtactaatcaaataatttcttgactgggtggcaggatgaattggcatcctcagattcctcctctgttggagaaatttcatctacaact |
221 |
Q |
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| T |
43698538 |
ttatactatatagtactaatcaaataatttcttgactgggtggcaggatgaattggcatcctctgattcctcctctgttggagaaatttcatctacaact |
43698439 |
T |
|
| Q |
222 |
gtatgtgatattttaactccaggaagggcgtgggcaatttctatcacacagagaaatacagtaaacgaagagatttccagagccttcattggcagcggag |
321 |
Q |
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| T |
43698438 |
gtatgtgatattttaactccaggaagggcgtgggcaatttctatcacacagagaaatacagtaaatgaagagatttccagagccttcatcggcagtggag |
43698339 |
T |
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| Q |
322 |
ctggattgaatgataaccttatttatcggtttgtatctctgatcctcaatcatagcttcatgctattttggtttactagtctctg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43698338 |
ctggattgaatgataaccttatttatcggtttgtatctctgatcctcaatcatagcttcatgctattttggtttactagtctctg |
43698254 |
T |
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