View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11452_low_4 (Length: 365)
Name: NF11452_low_4
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 365
Target Start/End: Complemental strand, 45176322 - 45175980
Alignment:
| Q |
23 |
tagcttgttagtatatatatttatacattttaagtaataaattataaccacaaaacagcttgagaatattgatgttacctccacttgattctgtaaagac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45176322 |
tagcttgttagtatatatatttatacattttaagtaataaattataaccacaaaacagcttgagaatattgatgttacctccacttgattctgtaaagac |
45176223 |
T |
|
| Q |
123 |
tgaacataattgattatttcatctaacataagagcctttccagttacctggttacaaagggagaaaaatgcttatgaataattatattttttgaaaaata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45176222 |
tgaacataattgattatttcatctaacataagagcctttccagttacctggttacaaagggagaaaaatgcttatgaataattatattttttgaaaaata |
45176123 |
T |
|
| Q |
223 |
gaatgtttattattaaagatattatttccaacagtataattttgagactttaattatatggacctatatgtgctgtcatgaaggttttacttgacctacc |
322 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45176122 |
gaatgtttattattaaagatattattttcaacagtataattttgagactttaattatatgggcctgtatgtgctgtcatgaaggttttacttgacctacc |
45176023 |
T |
|
| Q |
323 |
ttatcacagcctggcacaagttgctgcaacttcttcatccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45176022 |
ttatcacagcctggcacaagttgctgcaacttcttcatccttt |
45175980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 40312133 - 40312059
Alignment:
| Q |
97 |
ttacctccacttgattctgtaaagactgaacataattgattatttcatctaacataagagcctttccagttacct |
171 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||| ||| |||||||| ||||||| |
|
|
| T |
40312133 |
ttacctctacttgattttgtaaggactgtacataattgattatttcatccaacacaagggcctttccggttacct |
40312059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University