View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11452_low_5 (Length: 359)
Name: NF11452_low_5
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 27398060 - 27398409
Alignment:
| Q |
7 |
gatttatgatactctgatgagagatacatga-----aatgaagcagaaacccatgtgtttcttacagtttactcgtactttcaacctttttcaccttact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27398060 |
gatttatgatactctgatgagagatacatgaaatgaaatgaagcagaaacccatgtgtttcttacagtttactcgtactttcaacctttttcaccttact |
27398159 |
T |
|
| Q |
102 |
cttattcctttacctctaaaattcaaatttcaacaccccacacacaaaataacttcaattatttcaaaataaatacatcaaaatactaacattagcttgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27398160 |
cttattcctttacctctaaaattcaaatttcaacaccccccacacaaaataacttcaattatttcaaaataaatacatcaaaatactaacattagcttgt |
27398259 |
T |
|
| Q |
202 |
atatcctttgtatctattctgatttttgaaatactgattagtattaataagaacaaaccatataaccagctagctaagttgtcgaggaactttcaatata |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27398260 |
atatcctttgtatctattctgatttttgaaatactgattagtattaataagaacaaaccatataaccagctagctaagttgtcgaggaactttcaatatg |
27398359 |
T |
|
| Q |
302 |
agcctggagaggtcacattcagcaaaatgattggtcggttggttcatttc |
351 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
27398360 |
agcctggagaggtcacattcaacaaaatgattggtcggttggttcttttc |
27398409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University