View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11452_low_6 (Length: 353)

Name: NF11452_low_6
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11452_low_6
NF11452_low_6
[»] chr6 (2 HSPs)
chr6 (5-333)||(31082909-31083237)
chr6 (227-288)||(26255762-26255823)
[»] chr2 (1 HSPs)
chr2 (5-337)||(9308128-9308460)
[»] chr8 (5 HSPs)
chr8 (132-285)||(19967101-19967254)
chr8 (132-285)||(21025740-21025893)
chr8 (131-201)||(32147757-32147827)
chr8 (182-219)||(30047439-30047476)
chr8 (227-288)||(43443297-43443358)
[»] chr1 (2 HSPs)
chr1 (132-285)||(20784559-20784712)
chr1 (132-285)||(29471346-29471499)
[»] chr7 (5 HSPs)
chr7 (132-285)||(29869597-29869750)
chr7 (227-288)||(35968105-35968166)
chr7 (227-288)||(35989517-35989578)
chr7 (182-219)||(39951700-39951737)
chr7 (227-288)||(43584613-43584674)
[»] chr5 (1 HSPs)
chr5 (182-219)||(198539-198576)
[»] chr4 (1 HSPs)
chr4 (182-219)||(3943693-3943730)
[»] chr3 (1 HSPs)
chr3 (182-219)||(22363321-22363358)


Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 31083237 - 31082909
Alignment:
Q  5 gagaagcataggcagccgaatgtcttcagattaattagctttggtttgctgttatgccaagcttcaaatggagtctttttctgcacagattttgttggca 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  31083237 gagaaacataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttggca 31083138  T
Q  105 atctgttcagcagaaaagctgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31083137 atctgttcagcagaaaaactgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgt 31083038  T
Q  205 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaatttgttaaatttttca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31083037 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgttcaatgtctgcatcttcacaaaatttgttaaatttttca 31082938  T
Q  305 catgtatattcagtcccattatcggacct 333  Q
    |||||||||||||||||||||||||||||    
T  31082937 catgtatattcagtcccattatcggacct 31082909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 26255823 - 26255762
Alignment:
Q  227 ccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaa 288  Q
    ||||| |||||||| || ||||||| ||| |||||||||||||| || || |||||||||||    
T  26255823 ccattttgttgtggcgtatatggtgttgtgagttgatgttcaattccagcttcttcacaaaa 26255762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 9308460 - 9308128
Alignment:
Q  5 gagaagcataggcagccgaatgtcttcagattaattagctttggtttgctgttatgccaagcttcaaatggagtctttttctgcacagattttgttggca 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  9308460 gagaaacataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttgaca 9308361  T
Q  105 atctgttcagcagaaaagctgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgt 204  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9308360 atctgttcagcagaaaaactgcagtatttgtagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgt 9308261  T
Q  205 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaatttgttaaatttttca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9308260 tcggtttttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaatttgttaaatttttca 9308161  T
Q  305 catgtatattcagtcccattatcggacctgatg 337  Q
    |||||||||||||||||||||||||||||||||    
T  9308160 catgtatattcagtcccattatcggacctgatg 9308128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 19967254 - 19967101
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgttcggtttttcctctctacaacaccatt 231  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| ||||| | ||| ||||| ||    || |||||    
T  19967254 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgtcctgttcttcctttcactcactccatt 19967155  T
Q  232 ctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcaca 285  Q
     ||||| || ||||| || ||||| |||||||| ||||||||||| || |||||    
T  19967154 ttgttgaggggtgtaaggagctgtaagttgatgctcaatgcctgcctcctcaca 19967101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 21025740 - 21025893
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgttcggtttttcctctctacaacaccatt 231  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| ||||| | ||| ||||| ||    || |||||    
T  21025740 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgtcctgttcttcctttcactcactccatt 21025839  T
Q  232 ctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcaca 285  Q
     ||||| || ||||| || ||||| |||||||| ||||||||||| || |||||    
T  21025840 ttgttgaggggtgtaaggagctgtaagttgatgctcaatgcctgcctcctcaca 21025893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 32147827 - 32147757
Alignment:
Q  131 tttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataat 201  Q
    ||||||||||||||||| || || ||||| ||| |||| ||||| || ||||||||| |||||||||||||    
T  32147827 tttgcagcctctgcccacaacttttttggaaaatctttttcatgtagcaagcatctttccatctccataat 32147757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 30047476 - 30047439
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  30047476 catcttgccatctccataactgttctgtttttcctctc 30047439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 43443358 - 43443297
Alignment:
Q  227 ccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaa 288  Q
    ||||| |||||||| || ||||||| ||| |||||||||||||| || || |||||||||||    
T  43443358 ccattttgttgtggcgtatatggtgttgtgagttgatgttcaattccagcttcttcacaaaa 43443297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 20784559 - 20784712
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgttcggtttttcctctctacaacaccatt 231  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| ||||| | ||| ||||| ||    || |||||    
T  20784559 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgtcctgttcttcctttcactcactccatt 20784658  T
Q  232 ctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcaca 285  Q
     ||||| || ||||| || ||||| |||||||| ||||||||||| || |||||    
T  20784659 ttgttgaggggtgtaaggagctgtaagttgatgctcaatgcctgcctcctcaca 20784712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 29471499 - 29471346
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgttcggtttttcctctctacaacaccatt 231  Q
    ||||||||||||||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| ||||| | ||| ||||| ||    || |||||    
T  29471499 ttgcagcctctgcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgtcctgttcttcctttcactcactccatt 29471400  T
Q  232 ctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcaca 285  Q
     ||||| || ||||| || ||||| |||||||| ||||||||||| || |||||    
T  29471399 ttgttgaggggtgtaaggagctgtaagttgatgctcaatgcctgcctcctcaca 29471346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 29869750 - 29869597
Alignment:
Q  132 ttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcatcttgccatctccataattgttcggtttttcctctctacaacaccatt 231  Q
    ||||||||||| ||||| ||| ||| ||||| ||||| |||||||| | ||||||  |||| ||||| ||||| | ||| ||||| ||    || |||||    
T  29869750 ttgcagcctcttcccaatattccttaggcaaccctttctcatgaagcatgcatctgaccatttccattattgtcctgttcttcctttcactcactccatt 29869651  T
Q  232 ctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcaca 285  Q
     ||||| || ||||| || ||||| |||||||| ||||||| ||| || |||||    
T  29869650 ttgttgaggggtgtaaggagctgtaagttgatgctcaatgcatgcctcctcaca 29869597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 35968105 - 35968166
Alignment:
Q  227 ccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaa 288  Q
    ||||| |||||||| || ||||||| ||| |||||||||||||| || || |||||||||||    
T  35968105 ccattttgttgtggcgtatatggtgttgtgagttgatgttcaattccagcttcttcacaaaa 35968166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 35989517 - 35989578
Alignment:
Q  227 ccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaa 288  Q
    ||||| |||||||| || ||||||| ||| |||||||||||||| || || |||||||||||    
T  35989517 ccattttgttgtggcgtatatggtgttgtgagttgatgttcaattccagcttcttcacaaaa 35989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 39951700 - 39951737
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  39951700 catcttgccatctccataactgttctgtttttcctctc 39951737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 43584674 - 43584613
Alignment:
Q  227 ccattctgttgtggagtgtatggtgctgttagttgatgttcaatgcctgcatcttcacaaaa 288  Q
    ||||| |||||||| || ||||||| ||| |||||||||||||| || || |||||||||||    
T  43584674 ccattttgttgtggcgtatatggtgttgtgagttgatgttcaattccagcttcttcacaaaa 43584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 198539 - 198576
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  198539 catcttgccatctccataactgttctgtttttcctctc 198576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 3943730 - 3943693
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  3943730 catcttgccatctccataactgttctgtttttcctctc 3943693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 22363358 - 22363321
Alignment:
Q  182 catcttgccatctccataattgttcggtttttcctctc 219  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  22363358 catcttgccatctccataactgttctgtttttcctctc 22363321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University