View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11452_low_9 (Length: 242)
Name: NF11452_low_9
Description: NF11452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11452_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 47270845 - 47270634
Alignment:
| Q |
19 |
cagcacatcgttggctgtttgatcgagatcaaacggtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaatcaccgacgtgttgac |
118 |
Q |
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| T |
47270845 |
cagcacatcgttggctgtttgatcgagatcaaacagtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaaccaccgacgtgttgac |
47270746 |
T |
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| Q |
119 |
tgcgtgaattgttgactgcaacacaaatccaaatccaaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgt |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47270745 |
tgcgtgaattgttgactgca--acaaatccaaatccaaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgt |
47270648 |
T |
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| Q |
219 |
tggtggtacctttg |
232 |
Q |
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|||||||||||||| |
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| T |
47270647 |
tggtggtacctttg |
47270634 |
T |
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