View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_high_11 (Length: 482)

Name: NF11453A_high_11
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_high_11
NF11453A_high_11
[»] chr5 (13 HSPs)
chr5 (6-482)||(9675805-9676277)
chr5 (66-395)||(10213488-10213821)
chr5 (141-265)||(10102410-10102535)
chr5 (128-395)||(12105610-12105852)
chr5 (148-357)||(9677479-9677677)
chr5 (188-395)||(9684234-9684439)
chr5 (295-395)||(13855399-13855500)
chr5 (397-482)||(10213346-10213432)
chr5 (397-462)||(12105489-12105554)
chr5 (292-395)||(10211310-10211414)
chr5 (397-445)||(9684130-9684178)
chr5 (30-107)||(12108062-12108142)
chr5 (397-447)||(10211204-10211254)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Complemental strand, 9676277 - 9675805
Alignment:
Q  6 gtttggagttggagttaaaaccatcgtaacagattcgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttcaaagcagca 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676277 gtttggagttggagttaaaaccatcgtaacagatttgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttcaaagcagca 9676178  T
Q  106 ttcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676177 ttcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaa 9676078  T
Q  206 ttgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacat 305  Q
    ||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||    
T  9676077 tt----accttcttatgcaatgaagagtactatctcgttttatgtttcattggtatttttgaaggaattttgttaaacctaataactgtttatagtgcat 9675982  T
Q  306 gcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtattctatagccatggtagattttcatcgtttag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675981 gcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtattctatagccatggtagattttcatcgtttag 9675882  T
Q  406 ctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtatttgccttgatttgtaaccaagt 482  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  9675881 ctcaatacagctcagctgttgaaaggcgagttcttattcacgctgtttcatgtatttgccctgatttgtaatcaagt 9675805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 66 - 395
Target Start/End: Complemental strand, 10213821 - 10213488
Alignment:
Q  66 acaaaatacaaatctgcatttgt--gtcatttcaaagcagcattcataatctctgtatgtccagtgtttgaaa-aatgtatttgccaagtgcaacaatat 162  Q
    ||||||| |||||||||||||    |||||||  |||||||||||||| | | ||||||  || |||| |||| || |||||||||||||||||||||||    
T  10213821 acaaaatgcaaatctgcatttacaagtcattttgaagcagcattcatactttgtgtatgctcaatgttagaaataaagtatttgccaagtgcaacaatat 10213722  T
Q  163 aaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatt 262  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10213721 gaattatacgatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtactatctcgttttatatttcattggtatt 10213622  T
Q  263 tttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacag 361  Q
    |||||| ||||| ||||||||  |||||||||||||||| ||||| ||||| ||||||||| |||||||||||| |||||| | |||||||||||||||     
T  10213621 tttgaatgaattatgttaaacctaataactgtttatagtgcatgcataaccggttgaccagtgtcagtacactatgataaactctcattgtcttcaacaa 10213522  T
Q  362 cattcttctgtattctatagccatggtagatttt 395  Q
     |||||| |||| |||||||||||||||||||||    
T  10213521 aattcttttgtactctatagccatggtagatttt 10213488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 10102410 - 10102535
Alignment:
Q  141 tatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaa-aagttaaattgatcaccttcttatgcaatgaagagtacaatc 239  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||    
T  10102410 tatttgccaagtgcaacaatatgaattatacaatgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatc 10102509  T
Q  240 tcgttttatgtttcattggtattttt 265  Q
    |||||| || ||||||||||||||||    
T  10102510 tcgtttcatatttcattggtattttt 10102535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 395
Target Start/End: Complemental strand, 12105852 - 12105610
Alignment:
Q  128 tgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatg 227  Q
    |||| |||||| || |||||||||| ||||||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  12105852 tgttagaaaaaagtgtttgccaagttcaacaatatgaattgtacaatgaagtgttctatgctctttgaaaaagttaaattgatcaccttcttgtgcaatg 12105753  T
Q  228 aagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtc 327  Q
    |||||||| ||||| ||| || |||| |||||||| |||                   |||||||| ||||||| ||||| ||| | |||||||| ||||    
T  12105752 aagagtactatctcatttcatctttcgttggtattcttg-------------------aataactg-ttatagtgcatgcataagcagttgaccaacgtc 12105673  T
Q  328 agtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtagatttt 395  Q
    |||||||||| ||||||| |||||||||||||      |||||||||||||||||||||||||||||||    
T  12105672 agtacactaaaataaagtctcattgtcttcaa------tcttctgtattctatagccatggtagatttt 12105610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 357
Target Start/End: Complemental strand, 9677677 - 9677479
Alignment:
Q  148 caagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgtttta 247  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||  |||||          ||||| ||| |    
T  9677677 caagtgcaacaatatgaattgtacaatgaagtgttctatgct-tttaaaaaagttaaattgatcaccttcttgcgcaat----------atctcatttca 9677589  T
Q  248 tgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-t 346  Q
    | ||||||||||||| ||||| ||| | || |||||| |||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||||      
T  9677588 tctttcattggtattcttgaatgaagtatgctaaacttaataactgtt-atagtgcatgcataaccagttgaccagcatcagtacactaagataaagtca 9677490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 395
Target Start/End: Complemental strand, 9684439 - 9684234
Alignment:
Q  188 ttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaa 287  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||| |||| |||| || ||||| |||||||||||||  || | |||  | | |      
T  9684439 ttctttgaaaaagttaaatcgatcaccttctcatgcaatgaagagtactatcttgtttgatttttcaatggtatttttgaataaagtatgtatagccc-- 9684342  T
Q  288 taactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaag-ttcattgtcttcaacagcattcttctgtattctatagccatg 386  Q
     |||||||||| || ||||| |||  |||||||  |||| ||||||||||||||| |  || ||||||||||||| |||||| ||||| |||||||||||    
T  9684341 -aactgtttattgtgcatgcataatttgttgacttgcgtaagtacactaagataaggcctctttgtcttcaacaggattcttttgtatgctatagccatg 9684243  T
Q  387 gtagatttt 395  Q
    |||||||||    
T  9684242 gtagatttt 9684234  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 13855399 - 13855500
Alignment:
Q  295 ttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtagatt 393  Q
    ||||||| ||||  ||||| ||||||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  13855399 ttatagtgcatgtataaccagttgaccagtgtcagtacactaagataaattctcattgtcttcaacatgattcttctgtattctatatccatggtagatt 13855498  T
Q  394 tt 395  Q
    ||    
T  13855499 tt 13855500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 482
Target Start/End: Complemental strand, 10213432 - 10213346
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattc-acgcagtttcatgtatttgccttgatttgtaaccaagt 482  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| || | ||||| ||||||||||  ||||| ||| |||||    
T  10213432 atcgtttagctcaatacagctcagcggttggaaggtgagttcttattcaacactgtttcgtgtatttgccaggatttttaatcaagt 10213346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 12105554 - 12105489
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtattt 462  Q
    |||||||  ||||||| ||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  12105554 atcgtttctctcaataaagctcagctcttggaaggtgagttcttattcacgctgtttcatgtattt 12105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 10211414 - 10211310
Alignment:
Q  292 tgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtag 390  Q
    ||||||||||  |||| || | |||||||| |||||||||||||||| |||||  || ||||||||||||  |||||| ||||| ||||||||||||| |    
T  10211414 tgtttatagtgtatgcatagcttgttgacctgcgtcagtacactaaggtaaagcctctttgtcttcaacaagattcttttgtatactatagccatggttg 10211315  T
Q  391 atttt 395  Q
    |||||    
T  10211314 atttt 10211310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 445
Target Start/End: Complemental strand, 9684178 - 9684130
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattca 445  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  9684178 atcgtttagctcaatacagctcatcggttggaaggtgagttcttattca 9684130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 12108142 - 12108062
Alignment:
Q  30 cgtaacagattcgtttgatagcgtgaggatttggaaacaaaa-tacaaatctgcatt--tgtgtcatttcaaagcagcatt 107  Q
    ||||||||||| |||| || | |||||||||| | ||||||| ||||||||||||||  || |||||||||||||||||||    
T  12108142 cgtaacagattggtttaatggtgtgaggatttaggaacaaaaatacaaatctgcattcatgagtcatttcaaagcagcatt 12108062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 10211254 - 10211204
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacg 447  Q
    ||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||    
T  10211254 atcgtttagctcaatgcagctcatctgttagaaggtgagctcttattcacg 10211204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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