View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_high_2 (Length: 666)
Name: NF11453A_high_2
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 256 - 650
Target Start/End: Complemental strand, 43890558 - 43890164
Alignment:
| Q |
256 |
attctactattcgatcgtcaattccaactatctaaggcttgaatcagtcaatattgttgtgggtttttggttttgatcgaaaaagtttcgatttttggtg |
355 |
Q |
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| T |
43890558 |
attctactattcgatcgtcaattccaactatctaaggcttgaatcagtcaatattgttgtgggtttttggttttgatcgaaaaagtttcgatttttggtg |
43890459 |
T |
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| Q |
356 |
ctgggtaatcgagggttgttatttttgtcttctgatcgagatgggtgcagtttcggaatctgcttctgctgattgtttcagtgaggtgatgtcgtcgatg |
455 |
Q |
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| T |
43890458 |
ctgggtaatcgagtgttgttatttttgtcttctgatcgagatgggtgcagtttcggaatctgcttctgctgattgtttcagtgaggtgatgtcgtcgatg |
43890359 |
T |
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| Q |
456 |
cccggtttccgctttcatcctacagatgaggagttggtgatgtattatctgaaaaggaagatttgtgggaagaagttgaagttcaacgttatcaaagaaa |
555 |
Q |
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| T |
43890358 |
cccggtttccgctttcatcctacagatgaggagttggtgatgtattatctgaaaaggaagatttgtgggaagaagttgaagttcaacgttatcaaagaaa |
43890259 |
T |
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| Q |
556 |
ccgatgtgtacaagtgggatcctgaggatttgccaggtatttgttcttgctcttcactcttaataccctttgatgtccatctcattgctgattgt |
650 |
Q |
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| T |
43890258 |
ccgatgtgtacaagtgggatcctgaggatttgccaggtatttgttcttgctcttcactcttaatacccttttatgtttttctgattgctgattgt |
43890164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 43890785 - 43890626
Alignment:
| Q |
32 |
tcataccctgttatttttcatccattttctctctcgatattttggnnnnnnnnnn---gtttcacgacaacctaatcctcgaatcctcgtacccagaggc |
128 |
Q |
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| T |
43890785 |
tcataccctgttatttttcatccattttctctctcgatattttggggtttctttttttgtttcacgacaacctaatcttcgaatcctcgtacccagaggt |
43890686 |
T |
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| Q |
129 |
tcgatcctattattttgttgtgggttttttgttacaccacttatttattcaaaaagcttg |
188 |
Q |
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| T |
43890685 |
tcgatcctattattttgttgtgggttttttgttacaccacttatttattcaaaaagcttg |
43890626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 42367589 - 42367674
Alignment:
| Q |
95 |
acaacctaatcctcgaatcctcgtacccagaggctcgatcctattattttgttgtgggttttttgttacaccacttatttattcaaaa |
182 |
Q |
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| T |
42367589 |
acaaccgaatcct-gaatcctcgtaccca-aggttctatcctattattttgttgtgggttttatgttaaatcgcttatttattcaaaa |
42367674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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