View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_high_29 (Length: 244)
Name: NF11453A_high_29
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_high_29 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 25614839 - 25614660
Alignment:
| Q |
16 |
catcaaaattaaaccaagataactcacaaataaaatttatataatttctagtggtataaaataccaactttccagacaatnnnnnnnnctaaaagtaaaa |
115 |
Q |
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| T |
25614839 |
catcaaaattaaaccaagacaactcacaaataaaatttatataatttctagtagtataaaataccaactttccagacaatagagaaaactaaaagtaaaa |
25614740 |
T |
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| Q |
116 |
gcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
195 |
Q |
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| T |
25614739 |
gcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
25614660 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 31262838 - 31262760
Alignment:
| Q |
105 |
taaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacacc |
183 |
Q |
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| T |
31262838 |
taaaggtaaaagcatcgaaacagaatttttatcaatccacaattgcagtctaccctaaaattcattcatactaaacacc |
31262760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 1090 - 1169
Alignment:
| Q |
106 |
aaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccat |
185 |
Q |
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| T |
1090 |
aaaaataaaagcatccaaaccgaattgttatcaatccacaattgtagtccatcctagaatacatcaatactaaagaccat |
1169 |
T |
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